Gene Sputcn32_2203 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_2203 
Symbol 
ID5080325 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand- 
Start bp2540712 
End bp2541353 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content43% 
IMG OID640499365 
Productputative solute/DNA competence effector 
Protein accessionYP_001183723 
Protein GI146293299 
COG category[T] Signal transduction mechanisms 
COG ID[COG3109] Activator of osmoprotectant transporter ProP 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.702868 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGGAAT CAACAGATAA GTTGACCGAC ACCAATGCAA TTTTGGCGTA TTTGTATGAA 
ACATTTCCTT TGTGCTTTAT TGCTGAAGGT GAAACTAAGC CATTAAAAAT CGGATTGTTT 
CAAGATTTGG CTGAAAGGTT GGCTGATGAT TCTAAGGTCA GTAAAACTCA ACTACGAGTT 
GCCTTAAGAC GTTATACCAG CAGCTGGCGT TACCTGAAAT GTGTAAAAGC AGGCGCACAA 
CGGGTTAACC TCGATGGCGA ACCTTGTGGT GAGTTAGAGC AAGAACATAT TGATCATGCT 
CAAGCCATGT TGAAAGAAAG TCAGGAAAAA GCGAAGGCAA TACGTGCGGC AAAAGCACCT 
AGTACGCCTA AAGCTGCAGC CAAAAAAGCG CATAAGAAAG TGGCCGTTCC TCAACGTCCT 
AAAACTGAGC GTCCTGCTAA ACCAGCACCT AAAGTTGCTG CGCCAGTGGT CAATTTAGTG 
CAAGCACAGT TGACTGATTT AGCGAAAAAA CAACGTGTTA ATGTTAAGTT AGGTATGACA 
CCCGTTGCCG GCGTGATCAC TGACATTAAT AAAGAGGACA TTCATGTTCA GCTTGATAGC 
GGTCTAACGA TTAAAGTTAG AGCGGAACAT ATCCTGCTGT AA
 
Protein sequence
MMESTDKLTD TNAILAYLYE TFPLCFIAEG ETKPLKIGLF QDLAERLADD SKVSKTQLRV 
ALRRYTSSWR YLKCVKAGAQ RVNLDGEPCG ELEQEHIDHA QAMLKESQEK AKAIRAAKAP 
STPKAAAKKA HKKVAVPQRP KTERPAKPAP KVAAPVVNLV QAQLTDLAKK QRVNVKLGMT 
PVAGVITDIN KEDIHVQLDS GLTIKVRAEH ILL