| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2090 |
|---|
| Symbol | |
|---|
| ID | 5078295 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 2393846 |
|---|
| End bp | 2394520 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640499252 |
|---|
| Product | Ni/Fe-hydrogenase, b-type cytochrome subunit |
|---|
| Protein accession | YP_001183610 |
|---|
| Protein GI | 146293186 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1969] Ni,Fe-hydrogenase I cytochrome b subunit |
|---|
| TIGRFAM ID | [TIGR02125] Ni/Fe-hydrogenase, b-type cytochrome subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.427939 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCATT CTGCAACCCG CATTCGTACA CTAGTATTTA GTCCTGCAAT ACGAATTTTT
CACTGGCTTA GGGCACTATC AATATTGGTG CTGGTGATCA CAGGATTCTA TATTGCTTGG
CCGTTTCTTG TGGCACCAGA AAGTAGCGAT GTACTCATTC AAGGTTGGAT CCGTTTTGCT
CACTTGGTTT GTGGTTTTTT ACTGACCGCA ATTACTTTAG TTCGCTTCTA TCTGTATTTT
TTCAGCCGAA GCGATATTGA GCGACGTTCA TTCCGGGATG TAATGAGTAT CCAAAGTTGG
ATAACCCAAC TGAAATCCTA TATTTGGATG GGACATTTGC ATAAAGCGGG AGTCTATGGA
CCACTGCAAT TTGTGACTTA TGTAGCAATA TCCTTAGTTG CACTGGTGAT TTGTATTACA
GGCCTCGTTT TATATGCCAA TGTATACCAC GAAGGTTTAG GTGGCATGCT TTGGGGAAGC
GCAGCCTGGA TTACAGCACA AATGGGTGGA CTCGCACAGG TTAGGATTTG GCACCACTAC
CTCACTTGGG CATTTGTTAT CTTTGTGGTT ATCCACGTCT ATATGGCGGT TTGGTCAGGG
ATACGCTTCA AACATAACTC TGTTGACTCA ATTGTCTCTG GCTATGACTA CCATAAGCCA
GACTCACATC ACTAG
|
|---|
| Protein sequence | MNHSATRIRT LVFSPAIRIF HWLRALSILV LVITGFYIAW PFLVAPESSD VLIQGWIRFA
HLVCGFLLTA ITLVRFYLYF FSRSDIERRS FRDVMSIQSW ITQLKSYIWM GHLHKAGVYG
PLQFVTYVAI SLVALVICIT GLVLYANVYH EGLGGMLWGS AAWITAQMGG LAQVRIWHHY
LTWAFVIFVV IHVYMAVWSG IRFKHNSVDS IVSGYDYHKP DSHH
|
|---|
| |