Gene Sputcn32_2078 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_2078 
Symbol 
ID5079504 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand
Start bp2377865 
End bp2379712 
Gene Length1848 bp 
Protein Length615 aa 
Translation table11 
GC content44% 
IMG OID640499240 
Productsignal peptide peptidase SppA, 67K type 
Protein accessionYP_001183598 
Protein GI146293174 
COG category[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0616] Periplasmic serine proteases (ClpP class) 
TIGRFAM ID[TIGR00705] signal peptide peptidase SppA, 67K type
[TIGR00706] signal peptide peptidase SppA, 36K type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.18784e-06 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCGCTA ACCCATCGTT TTTCAAGAGA ATATGTTTGT TTATTTGGAA TATCCTCAAC 
GGAACCCGTA AACTCATCCT CAATCTGATC TTTTTTGGTA TCTTGGCAGT CATCATGATT
TCCATAACTG CCGGCGAAGA TATCCAAGTC GAAGATAACT CGGCACTGGT ACTTAACCTA
GCCGGTTCTA TCGTCGATCA AAAACAACAG ATTGATCCTA TAGAAGCGGC GCTCAAACAA
GGGAATAAGG CAAATGCCGA TGGTGAAATC CTGCTCGCAG ATGTGTTATA TGTGATTGAT
AACGCAGCAC AAGATACAAG GATAACAACC CTAGTTTTAG ATTTAGCCGA TCTTAAACGT
GCGGGGATCA GTAAACTACA ATCTATAGGT AACGCCATTA ACCGCTTTAA AGAAAGCGGC
AAACAAGTGG TTGCCATTGG TAATTATTAC GAACAGAATC AATATTTTCT CGCCAGCTTT
GCCGATACGA TATATCTCAA TCCTCAGGGG GGTATTTCAC TCGATGGCCT CAGCATGTAC
AACTTATACT TCAAATCGGC TTTAGAGAAA CTCAAAATAA AAGCCCATAT TTTTCGGGTC
GGTACCTTCA AATCTGCTGT TGAACCCTAT ATGCGCGATG ATATGTCTGA TGCTGCAAAA
GAAGCTAACA GCGCACTGCT CGCCGATGTA TGGCAAAGTT ATACCCAAAC AGTTGCCAAC
AATCGCAATA TAGACGCCTC AGCCCTCGTT CTCGATGCAT CAACCTACTT AGCCGAGTTA
GATAAAGCCC AAGGCGACTC TGCGACGATG GCTATCAATA TGAAGTGGGT TGATTCACTC
GCCACTGCTG AAGATTTCCG CAAAACCATG CTCGATACGG TAGGCAAAGC GAAAAGTGGC
GATAGTTTTA AGCAAATCAG TTTTTATGAC TATTTAACCC TTGTCGCCCC TAAACCTAGC
TTTATTGAGC AAGATAGCGT TGGAATTATC GTTGCCAGTG GCACTATCCT CAATGGCAAG
CAACCTGCTG GACAAATTGG TGGCGATAGC ACGGCAGAAT TGTTACGTAA AGCCCGCTTT
GATAAACACA TTAAGGCCTT AGTGCTTAGA GTGGATAGCC CTGGCGGAAG TGCTTTCGCA
TCAGAGCAAA TTCGCCAAGA ACTACTCGCC TTAAAAGCGG CGGGTAAACC TGTGGTTGTC
AGTATGGGAA GCCTTGCTGC ATCCGGCGGC TATTGGATTT CGGCCAGTGC AGATTATATT
TTTGCAACGC CCACTACACT TACAGGCTCA ATCGGTATTT TTGGTATGAT CACCACTTTT
GAAGATTCCC TTGATAGCAT AGGAATACAT ACGGATGGCG TATCCACATC TGAATGGGCT
GGTTTATCGG TGACTCGTAC CCTTTCATCA TCGGTTGAAG CGGTTATCCA GCGCCATATT
GAGCGAGGTT ATCTCAATTT TATTTCCCTC GTTGCCAAAG AGCGTAACAT GACCTTAGAA
CAGGTCGATA GCATCGCCCA AGGGCGGGTG TGGAGCGGTA AAAAAGCCCT TGAGTTAGGT
TTAGTCGATG AGCTAGGCGA CATCGATGAA GCTATCGCCA AAGCCGCAAA ATTAGCCAAT
TTGAATCTAT TTGATACCCG TGTGATTGAA CAGGAATTAA CCCCTGAACA ACTCTTTATT
CAGCAAATGT TTGCTTCAGT ATCGAGTTAT TTACCGGCAT CACTTAGCCA TTCTTCTGTG
CTTGAGCAAA TGCTACAACA ATGGACTGGT AGCCTAAAGA CGATTACCTC TTTCAATGAT
CCTAATCATG TTTATATTTA CTGTGACAAC TGTGAGTTAC TCAATTAA
 
Protein sequence
MSANPSFFKR ICLFIWNILN GTRKLILNLI FFGILAVIMI SITAGEDIQV EDNSALVLNL 
AGSIVDQKQQ IDPIEAALKQ GNKANADGEI LLADVLYVID NAAQDTRITT LVLDLADLKR
AGISKLQSIG NAINRFKESG KQVVAIGNYY EQNQYFLASF ADTIYLNPQG GISLDGLSMY
NLYFKSALEK LKIKAHIFRV GTFKSAVEPY MRDDMSDAAK EANSALLADV WQSYTQTVAN
NRNIDASALV LDASTYLAEL DKAQGDSATM AINMKWVDSL ATAEDFRKTM LDTVGKAKSG
DSFKQISFYD YLTLVAPKPS FIEQDSVGII VASGTILNGK QPAGQIGGDS TAELLRKARF
DKHIKALVLR VDSPGGSAFA SEQIRQELLA LKAAGKPVVV SMGSLAASGG YWISASADYI
FATPTTLTGS IGIFGMITTF EDSLDSIGIH TDGVSTSEWA GLSVTRTLSS SVEAVIQRHI
ERGYLNFISL VAKERNMTLE QVDSIAQGRV WSGKKALELG LVDELGDIDE AIAKAAKLAN
LNLFDTRVIE QELTPEQLFI QQMFASVSSY LPASLSHSSV LEQMLQQWTG SLKTITSFND
PNHVYIYCDN CELLN