| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1920 |
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| Symbol | |
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| ID | 5078540 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 2199464 |
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| End bp | 2200147 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640499081 |
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| Product | hemolysin III family channel protein |
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| Protein accession | YP_001183442 |
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| Protein GI | 146293018 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
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| TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCCAAGCC AAAGTATTAT CGAGCAACAA AACTCAACAA AAACCAATAC TAAATTTATG
CCATATAGTA CTAATGAAGA GATAGCTAAC AGTGTATCCC ATGGCCTAGG TGTGATCGCA
GGGATAGTGG CATTGGTGCT AATGCTGCTG AAAGGCCAAG ACCATCTTAC GATAATTCAA
CTTACGGGCG TTTTCGTTTA CGGTGCAAGT ATCATAGTGC TTTTTCTATG TTCAACCTTG
TACCACAGCG TTAGCCATTC AGGCTGGAAA CATAAACTTA AGATCGCCGA TCACTGTGCA
ATTTACTGCC TGATTGCAGG AACTTACACA CCTTTGATGC TGATAAGCCT ACAGGGAACA
CAATCGATAG TGATTTTAAC GGCGATTTGG TCGCTAGCAA TTGGCGGGAT TTTGTTCAAA
ACATTATTTA TTCATAAGTT TAAAAAACTC AGTTTAGCGC TATATCTGAC AATGGGGTGG
CTATGCGTGA CTATCATAGG TGACTTAACC ACAGCCATGT CAACACTTGG GTTTAACTTA
TTGATTTTAG GCGGACTATT TTACACCCTA GGCGTCATTT TCTATGTGGG AAAACGCATT
CCATTCAACC ATGCAATTTG GCATCTGTTT GTATTGGGAG GTGCTATGAG CCATTTTTTT
TGCATTTACT TAACGGTTAT TTAA
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| Protein sequence | MPSQSIIEQQ NSTKTNTKFM PYSTNEEIAN SVSHGLGVIA GIVALVLMLL KGQDHLTIIQ
LTGVFVYGAS IIVLFLCSTL YHSVSHSGWK HKLKIADHCA IYCLIAGTYT PLMLISLQGT
QSIVILTAIW SLAIGGILFK TLFIHKFKKL SLALYLTMGW LCVTIIGDLT TAMSTLGFNL
LILGGLFYTL GVIFYVGKRI PFNHAIWHLF VLGGAMSHFF CIYLTVI
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