| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1873 |
|---|
| Symbol | |
|---|
| ID | 5080184 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 2144062 |
|---|
| End bp | 2145444 |
|---|
| Gene Length | 1383 bp |
|---|
| Protein Length | 460 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640499031 |
|---|
| Product | Na+/H+ antiporter NhaC |
|---|
| Protein accession | YP_001183395 |
|---|
| Protein GI | 146292971 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1757] Na+/H+ antiporter |
|---|
| TIGRFAM ID | [TIGR03141] heme exporter protein CcmD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0663554 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAAC CGACAGCGTT AAGTCTTATT CCACCTTTGG TGGTATTGGT GTTAGCCATC
TGGTTACGCC GTCCCATTTT GTCCCTGATC ATCGGTGCAG TAAGTGGTTT GCTGCTACTC
GACCCAAGTG AAGTGTTAAA TAATTTTGCC AGTGCATCCC TTAAGGTTAT GGGTGATGAA
ACCATTGGTT GGTTAATTTT AGTATGTGGT TGTTTTGGTG CTTTAATTGC ACTCTTAGTG
CGCACTGGTG GTGCTTTAGC ATTTGGTCAT AATGCATTGA AATTTGCCAA AGGCCCTAAA
TCATCGCTTT TTATGACGTT TATTCTCGGT ATCGTTATTT TTATCGATGA TTATCTTAAT
GCGTTGACCG TGGGTGAAAC CATGAAGCGC GTGACCGATA AGTTTAAAGT ATCCCGAGAA
ATGTTAGCTT ATGTTGTGGA CTCTACAGCG GCACCTGTGT GCGTGTTAGT GCCTTTATCG
ACTTGGGCCG TATTCTTCGG TGGTTTACTG GTTGATAATG GGGTGGCAGC ACAAGGTCAG
GGGATTGCTG TCTATATGCA AGCCATTCCT TACATGCTCT ATGCTTGGTT AGCTGTTGCT
ATGGTACTAC TTGTTGTATT AGGTATTGTT CCAGCAATTG GTCCAATGAA AAAAGCGCAG
TTACGTGCAG CACAAGGCGA ACCCGCTCAA GAACAAGTCG ATTTTGAACA GGTGCAGACC
TCAGATGAAT ATGCGGTTAA AGCGATCGAA GAAGAATTTA AGCATGCAGA CAATCATGGC
AAGCTACATA ATTTTTTAGT GCCTATTGGG TTATTAGTTG CTTTTACCGT GTACTTTGAC
ATCGACGTCT GGAAGGGATT GCTGGCCACT TTAGTGTTTA CACTTCCTTA TTATGCGGTG
CAGCGTTTAA TGCCATTGTC AGAAATGATG GATCAAATGA TTGATGGTTT TAAGGGCATG
TTGCCAGCGA TAGGTACTGT AATTGCTGCA TTTGTGTTTA AGGATGTGTG TGATCAGTTA
TTATTACCAC AGTATGTGAT TACCGCATTA AGTCCTTTTA TGACACCTTC GCTGTTACCT
GCGGTGGTAT TCCTCTCTAT GTCTGTACTT GCATTTGCAA CAGGGTCAAG CTGGGGAATT
TTTGCAGTGA CAATTCCAAT TGTTATGCCA TTGGCTCAAT CTGTTGGAGC TGATATCCCC
TTAGTAATTG GTGCACTTTT ATCTGCATCT TCATTTGGTA GTCAAGCGTG TTTTTACTCG
GATTCAACTG TGTTAGCGGC ACAGGGGTCT GGTTGCAACT TAGTCAGTCA TGCTGTGACT
CAGTTACCTT ATGCGCTTAT CGCAGCGGTG CTTGCTTTTG TGGGCTTTAT ATTGATAGCC
TAA
|
|---|
| Protein sequence | MSEPTALSLI PPLVVLVLAI WLRRPILSLI IGAVSGLLLL DPSEVLNNFA SASLKVMGDE
TIGWLILVCG CFGALIALLV RTGGALAFGH NALKFAKGPK SSLFMTFILG IVIFIDDYLN
ALTVGETMKR VTDKFKVSRE MLAYVVDSTA APVCVLVPLS TWAVFFGGLL VDNGVAAQGQ
GIAVYMQAIP YMLYAWLAVA MVLLVVLGIV PAIGPMKKAQ LRAAQGEPAQ EQVDFEQVQT
SDEYAVKAIE EEFKHADNHG KLHNFLVPIG LLVAFTVYFD IDVWKGLLAT LVFTLPYYAV
QRLMPLSEMM DQMIDGFKGM LPAIGTVIAA FVFKDVCDQL LLPQYVITAL SPFMTPSLLP
AVVFLSMSVL AFATGSSWGI FAVTIPIVMP LAQSVGADIP LVIGALLSAS SFGSQACFYS
DSTVLAAQGS GCNLVSHAVT QLPYALIAAV LAFVGFILIA
|
|---|
| |