| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1842 |
|---|
| Symbol | |
|---|
| ID | 5079209 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 2106437 |
|---|
| End bp | 2107606 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640498992 |
|---|
| Product | peptidase |
|---|
| Protein accession | YP_001183364 |
|---|
| Protein GI | 146292940 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3182] Uncharacterized iron-regulated membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000009983 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAAGG TTAGTAACCG ATTTTGGTTT ATGTTGCATG GTTGGGTATC ACTCCCAATC
TGGTTGTTAT TTAGTTTTAT CTGTTTAACG GGGACGATTG CAGTACTTAG CCACGAACTG
ACGTGGCTCA CTAATCCTGC ATCCCGCGCC GTTAATCCAA ACAATTTGCC AGCAAAGTCG
GTTGATGAAT TAATGGCGGC GGTAAAAAAG GCTCATCCTA CAGCAGAAAT CAGTGGGGCT
ATGACCTTCG AGCCTTATCT TGTCAATGCA GTGATGTTTA CCGATGTGGA TAAACCCTAT
GCAATTGCTT ATGTGAATCA ATACACGGGT GACGTTCAGC AAATTAACGA AGGGCTGACT
TTTATTGGTT TTATGCGTTC ATTACATGGT TGGTTATTAT TTCCATGGCC TGGTAGTTAT
AGCGTAGGGT ATTACCTTGT CTGCTCTATG GCGGTATTGA TGCTGGCGTC TTTAATTACC
GGATTAATTG TTTATAAGCG GTTTTGGCGT AGTTTTTTGG CACCTAAAGT GCGTATTACG
CAAGGGAAAA AAACACTGCT AGCGGATTTA CACAAATTAT CTGGTGTTTG GTCAATTTGG
TTTATCGCCA TTATGAGTGC AACAGGATTA TGGTATTTAG TCCAAGCTGT TTTTTGGCAT
GCTGATATTG ATATCGAGCC TCATGCGCCG TTAATTGTGG CGGAGCAAGT TCCCTTGCTT
AAAGAGGGAG AGACAACTAT ACCCATTCCT GCGGTATCAC TTAATCAAGC TCTTATGATT
GCAAAGGAGC GTTTCCCTGA TTTTCAACCT AGTTATGTGA TGCTGCCAGA GCATAACCGG
GATATGTATC ACCTTAGCGG TAGTGGTGAT CATATTTTTT ATGACCAACA TTCCTATAGC
CTGAGTATTA ATCCTTGGAC GGGGGAAATA GCGAAAGCAT CATCACCCGA AACCATGACG
GGCATGCAAA CCATCATGCA CATTGCCGAT CCGCTGCACT ACGGCACGAT TGGGGGAATT
TGGACCAAGT TTATTTGGTT TGTGTTTGGT TTAATTTTGT CGGGTATGTC AATTACGGGC
TTTATGATGT GGGGATTACG TCATGTCAGA GCCTTTAAAA AAGCAGGATC TGATGACTTA
GCTGCCGATA TGTTAGGGGA GATTCGCTAA
|
|---|
| Protein sequence | MAKVSNRFWF MLHGWVSLPI WLLFSFICLT GTIAVLSHEL TWLTNPASRA VNPNNLPAKS
VDELMAAVKK AHPTAEISGA MTFEPYLVNA VMFTDVDKPY AIAYVNQYTG DVQQINEGLT
FIGFMRSLHG WLLFPWPGSY SVGYYLVCSM AVLMLASLIT GLIVYKRFWR SFLAPKVRIT
QGKKTLLADL HKLSGVWSIW FIAIMSATGL WYLVQAVFWH ADIDIEPHAP LIVAEQVPLL
KEGETTIPIP AVSLNQALMI AKERFPDFQP SYVMLPEHNR DMYHLSGSGD HIFYDQHSYS
LSINPWTGEI AKASSPETMT GMQTIMHIAD PLHYGTIGGI WTKFIWFVFG LILSGMSITG
FMMWGLRHVR AFKKAGSDDL AADMLGEIR
|
|---|
| |