Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_1841 |
Symbol | |
ID | 5079208 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 2104218 |
End bp | 2106308 |
Gene Length | 2091 bp |
Protein Length | 696 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640498991 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_001183363 |
Protein GI | 146292939 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000240616 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCAAAAAT CGCTGTTAGC TACACTCATT TCAAGTCTTT TATTAGCGCC AAGCTCCTAC GCTAATGAGC CTCAGTCCAC TACTGATATT GAAGTCATCA GTATTAAGGG AAGTCGTTTA GATAAAGCCG CAACGGCAAC TGGGTTGCCC TTAACGCTGC GGGAAACGCC ACAATCAGTC ACCATTATTG ATCAAGAGTT TATTCAAAGT TTCTCACTCA ATAGTGTCGC GGACTTAATG TTTTTAACCC CTGGCATTTA TGCCCAGAAA GCCGAGACCA ACCGCTATTT CTTTAGCTCC CGCGGTAATC CCATTACTAA TTTTCAGTTT GATGGCGTCC CCGTTAACTA CTCGAGTTTC TTTAATGACG CCTCAACCGA CACCATATTA TTTGACCGCG TTGAAGTTGT CCGCGGTGCA ACAGGACTCT TAACGGGTGC GGGTGAACCA TCTGCAGCAA TTAACCTTAT CCGTAAACGT CCTAAAGCGG CACCTGGCGG CTATGTCAGC GCAAAAGTCG GTGCATGGGA TAGTTACCGT GTTGAAGGCG ATGCCTCCGT TGATGTAACA GAGAGTGGTG ATGTGCAGGC ACGCTTTGCC GCCGCCTATG AAAAATCAGA TAGTTATATT GATCTAGCCG AAGATGAAAA CCTGCAAGTT TATGGCGTGA TCACTGCAAA ACTCAGTGAT AATACCCTAT TTACCCTAGG TGCTGATTAC AGTGACCGAG ATCCTAAAGG CTCTACTTGG GGTGGTCTTC CTCTATTTTA TGCTGATGGC AGCTTAGCTA ATGATTTATC CCGTTCGACC ACAACAGCAG CCTCTTGGTC AAGTTGGCAA CGCAATGGTG CAAACGTCTT TGCTACGCTT GAACATAATT TTGATAATAA TTGGGACGTC AAATTTGACG TGGAACATCG TGAAGATGAG ATGGATGGGC ACTTACTTTA TCTCTATGGT GCGCCAGATA AAACCACAGG TTTAGGTATG GGGGCATCGG CGATGATTTA TCAATCGACC CGTAAACAAG ATGCCGCGCG GCTATTTGCC TCTGGGCCAT TCGAACTCTT TGGTCGCGAG CATAAACTTA CCGCAGGTTT ACTATACTCT AAGCAAGATA CGACCGCAGA TTCCTATTAC CCATTAAATA GCATAAGTAT TGGTAACTTC TTCGAATGGG ATGGCTCCGT CGCTGAACCC AGTTATCCGT CTACGCCAAT CTATCAAGAA GGTGAGGAAA CTCAAAAAGG GGCCTATCTC GCGACACAAA TTAATTTACA CGATCAATGG ATGCTGTTAC TGGGTGGCCG CATTAGCCAA TATAAATTTG AATCAAACGC GGCGGCTGAC TACAACAATA GCGATGTCTT TACGCCCTAT GCAGGTCTGA TATATAACCT CAACGATAGC ATCTCGATTT ACACCAGTTA TACCGAAATA TTTCTGCCAC AGGATGCAAG AGACGCAAAC AATAAGCGCT TAGAGCCCAT GACCGGAAAT AATATTGAAC TGGGCGCAAA AGGGGATTTC TTCGATGAGA AACTGACCGC CAGTATAGCC GTATTTAAAG TGCAAAAAGA AAATGTGGCA GAACCCGATG ATAACGCCCT TCCCTTACCT GGTGGCAATT ATCCAATGCA CTTGGTGGAT GGGACCAGTA ACCAAGGTTA TGAAGTTGAG TTAAACGGTA GACCAACAGA AGACTGGGAT CTGTTTTTCA GCTATACCCA TAGTGAATCA GAAGATCAAG ATGGTTCAGC CTTTAGCACC TATCTACCAA AGGATCTGAT TCGTTTATCC TCCCTTTATC ACTTTGATGG TGCACTCGCG GATCTGACAG TCGGCGGTAA CTTAAGCTGG CAGAGTAAAA TTTACAAAGA CAAAGCAGGT CCCAATGGTG AGCGTTCCGA GCAAGACAGC TATTATCTCG TGAATCTGAT GACAAGCTAT CAACTGACAG ACGATGCGAA AGTTCAACTA AATATCAATA ACTTATTTGA TAAAAAATAT TACTCTAGCA TTGATTTTTA CAATCAAGGT TTCTTCGGCG AACCCCGAAA TATTGAGTTA AGCCTAAGCT ATAATTTCTA G
|
Protein sequence | MQKSLLATLI SSLLLAPSSY ANEPQSTTDI EVISIKGSRL DKAATATGLP LTLRETPQSV TIIDQEFIQS FSLNSVADLM FLTPGIYAQK AETNRYFFSS RGNPITNFQF DGVPVNYSSF FNDASTDTIL FDRVEVVRGA TGLLTGAGEP SAAINLIRKR PKAAPGGYVS AKVGAWDSYR VEGDASVDVT ESGDVQARFA AAYEKSDSYI DLAEDENLQV YGVITAKLSD NTLFTLGADY SDRDPKGSTW GGLPLFYADG SLANDLSRST TTAASWSSWQ RNGANVFATL EHNFDNNWDV KFDVEHREDE MDGHLLYLYG APDKTTGLGM GASAMIYQST RKQDAARLFA SGPFELFGRE HKLTAGLLYS KQDTTADSYY PLNSISIGNF FEWDGSVAEP SYPSTPIYQE GEETQKGAYL ATQINLHDQW MLLLGGRISQ YKFESNAAAD YNNSDVFTPY AGLIYNLNDS ISIYTSYTEI FLPQDARDAN NKRLEPMTGN NIELGAKGDF FDEKLTASIA VFKVQKENVA EPDDNALPLP GGNYPMHLVD GTSNQGYEVE LNGRPTEDWD LFFSYTHSES EDQDGSAFST YLPKDLIRLS SLYHFDGALA DLTVGGNLSW QSKIYKDKAG PNGERSEQDS YYLVNLMTSY QLTDDAKVQL NINNLFDKKY YSSIDFYNQG FFGEPRNIEL SLSYNF
|
| |