Gene Sputcn32_1762 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_1762 
Symbol 
ID5079320 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand
Start bp2008916 
End bp2010019 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content44% 
IMG OID640498911 
Productribonuclease D 
Protein accessionYP_001183286 
Protein GI146292862 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0349] Ribonuclease D 
TIGRFAM ID[TIGR01388] ribonuclease D 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value6.18336e-08 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTCCACT ATGTGAGTGA TGAAGTGAGC CTTAACGCCC TCGTTGCTCA ATATCAGCAA 
AGTAAAATAC TCGTGTTAGA TACCGAGTTT GTTCGTACCC GTACTTATTA TGCAAAGTTA
GGTTTGATCC AAGCTTATGA TGGAAAAACC TTGGCGTTGA TTGATCCTGT CGCGCTACCC
GATCTCGCCA AATTCTGGGC TTTGTTGGCG AATCCCAATA TTATTAAATT AGTGCATTCT
TGTAGTGAAG ACCTAGAAGT ATTCGCGCAC TATGGTCAGT GTCAACCTGT ACCTTTATTC
GATAGCCAAA TTGCGGCATC TTTATGTGGT ATGGGGCATG GTGTTGGTTA TGCAAAGTTA
GTTGAAACCT GTCTTGGCGA AGTGATTGAT AAAGGTGAGT CACGCACCGA TTGGATCCGC
AGGCCATTAA CCGAAGCGCA ACTTGCCTAT GCCGCAAATG ATGTGTTGTA TCTGCATCAA
CTTTACCCTC AGCTTGAAGC TAAATTGGTC GCTCAGGGGC GCCTAAATTG GTTATATGAG
GAAGGGGTGA GGATGACGGA AGGGCGGCTA GATACGCCAG ATCTCGATAC CGCTTACTTA
AAAGTTAAAA ATGCCTTTCA GTTGACTGAA ATTCAATTGG CTTACCTGAA AGTACTTGCC
AAATGGCGTC TTGAAAAAGC CTTAGCACGT GATTTAGCTT TGGGATTTGT GATTAAAGAT
CATGGACTGA TTGCATTAGC TAAAAAACAG CCTAAAAGTA TGACCGAGTT GCTTAAGCTA
AACGACCTAA CCGAGCAGGA AAAGCGTATT CACGGTAAAG AGATTTTGCG AGTAATGCAA
ACCGTGGATT TGGTCAATCT ACCAGAGCTT GTCGATGTGC TTGCACTTAA GCCGGGCTAT
AAATCTGCTT TTAAGCTGAT CAAAAACTGT TTGACTGAAC TGTGTGAAAA GTATGAAGTT
CCACTGGAAA TGCTAGGTTC TAAGCGACAT ATCCATGAGT ATTTACAATG GAGATGGGAC
GCAGAGCAGG GCGATTTACC GATAATCTTA ACTGGGTGGC GTGGCGAAAT CGCCGCACAA
TCCCTCGCAA AGCTTGACGT TTAG
 
Protein sequence
MFHYVSDEVS LNALVAQYQQ SKILVLDTEF VRTRTYYAKL GLIQAYDGKT LALIDPVALP 
DLAKFWALLA NPNIIKLVHS CSEDLEVFAH YGQCQPVPLF DSQIAASLCG MGHGVGYAKL
VETCLGEVID KGESRTDWIR RPLTEAQLAY AANDVLYLHQ LYPQLEAKLV AQGRLNWLYE
EGVRMTEGRL DTPDLDTAYL KVKNAFQLTE IQLAYLKVLA KWRLEKALAR DLALGFVIKD
HGLIALAKKQ PKSMTELLKL NDLTEQEKRI HGKEILRVMQ TVDLVNLPEL VDVLALKPGY
KSAFKLIKNC LTELCEKYEV PLEMLGSKRH IHEYLQWRWD AEQGDLPIIL TGWRGEIAAQ
SLAKLDV