| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1705 |
|---|
| Symbol | |
|---|
| ID | 5079363 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 1943852 |
|---|
| End bp | 1946947 |
|---|
| Gene Length | 3096 bp |
|---|
| Protein Length | 1031 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640498854 |
|---|
| Product | acriflavin resistance protein |
|---|
| Protein accession | YP_001183229 |
|---|
| Protein GI | 146292805 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0236776 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATACTGA CTGATCTTTC GGTTAAACGA CCGGTTTTTG CATCTGTCAT TAGTCTCCTT
GTGGTTGCTT TTGGTCTCGT CTCTTTCGAT AAGTTGCCAT TGCGGGAATA TCCTAATATC
GACCCGCCAA TTGTTTCCAT AGAAACCAAT TACCGTGGCG CCAGTGCCGC AGTGGTTGAG
AGCCGTATCA CCCAACTGAT TGAAGACAGG ATCAGTGGCG TAGAAGGTAT TCGTCATGTC
AGCTCATCGA GTAGCGATGG TCGCTCTTCG GTAACATTAG AATTTGATAT CAGCCGAAAT
ATTGAAGATG CGGCTAACGA TGTACGCGAC AGAATCTCAG GATTACTCGA TAACTTGCCA
GAGGAAGCCG ATCCCCCTGA AGTGCAAAAA GCCAATGGTG GTGATGAAGT TATCATGTGG
CTTAATCTAG TCTCGGATAA TATGACGACC CTCGAATTGA CCGATTACAC CAATCGTTAC
CTGTCTGATC GTTTATCCGT GGTCGATGGC GTGGCGAGGA TCCGTATCGG CGGGGGGAAA
GTTTACGCAA TGCGGATTTG GCTCGACAGA CAAGCCCTTG CTTCGCGTAG CCTTACCGTG
GCGGATGTCG AGGCGGCACT AAGAGCCGAA AACGTCGAGT TACCTGCAGG TTCGATTGAA
TCGAAAGAGC GGCATTTTAC TGTACGTTTA GAGCGGAGTT ATCGCACCGC TGAAGACTTT
GCCAATTTAG TGCTTACTCA GGGGAATGAT GGTTATCTCG TCAAACTGGG GGATGTCGCT
AAGGTTGAAA TCGGCTCTGA AGAAGAGCGT ATTATGTTCC GCGGTAATAA AGAGGCCATG
ATAGGGTTAG GTGTCTCAAA ACAGTCGACG GCTAACACCC TTGAAGTTGC CCGCGCCGTT
AATGCGTTGA TCGATAAAAT TAACCCAACA CTCCCCGCGG GTATGTCTAT TAAACGCAGC
TACGATAGTT CAGTGTTTAT TGAAGCCTCG ATTAAGGAAG TGTACCAAAC CCTGTTTATC
GCCATGATCT TAGTGATTAT TGTGATTTAT TTATTTCTGG GTAGTGCACG CGCCATGTTG
ATCCCCGCGA TTACGGTACC TGTATCCTTG CTGGGTACTT TTATCGTGCT ATATGCACTG
GGTTACACGA TTAACCTATT AACATTATTA GCAATGATCC TCGCTATCGG TATGGTAGTG
GACGATGCGA TTGTGATGTT AGAGAACATC CATCGACGGA TTGAAGAGGG CGATTCCCCC
CTTAAAGCCG CTTATCTCGG TGCGCGAGAA GTCGCCTTCG CGGTGATTGC CACAACTTTA
GTGCTGGTGT CGGTATTTAT GCCGATCACT TTCCTTGAAG GGGACTTAGG TAAACTCTTT
AAAGAGTTTG CTGTGGCGAT GAGCGCGGCG GTGATTTTCT CCAGTATTGT TGCCTTAACG
CTAAGTCCAA TGATGTGTTC TAAATTGCTT AAACCTGCCA CGCAAGACTC ATGGTTGGTA
CGTAAAGTCG ATGGCATCAT GGCAAGTATT GCCCGTGGTT ATCAAACCTC ATTACAAAAA
GCGATGGCAA AGCCGTTATT GATGTCAGTG CTTGTCCTAT GTGCATTGGG GAGCAGTTTC
TTCCTTGTGC AAAAGGTGCC ACAGGAGTTT GCGCCCCAAG AAGATCGAGG TTCATTATTC
TTAATGGTAA ACGGTCCACA GGGCGCGAGT TACGAGTATA TCGAATCCTA TATGACCGAA
GTCGAAAACC GTTTAATGCC ACTGGTCGAT GCTGGTGATA TCAAACGCTT ACTCATTAGA
GCTCCTCGCG GATTTGGTCG CGCTGCCGAT TTTTCTAACG GTATGGCCAT TGTGGTATTG
GAAGATTGGG GACAGCGCCG CCCGATTAAA GAAGTGATTG TCGATATCAA TAAACGTCTT
GCCGATCTTG CGGGTGTGCA GGCATTTCCT GTGATGCGTC AAGCCTTTGG CCGTGGAGTG
GGTAAACCCG TGCAATTTGT AATTGGTGGA CCAAGCTACG AGGAACTCGC TCGCTGGCGT
GACATTATGA TGGAAAAAGC CGCAGAAAAT CCCATGTTAC TCGGGCTTGA CCATGACTAT
AAAGAGACTA AGCCACAGCT TAGAGTGGTG ATTGATCGTG ATAGAGCCGC CAGTCTTGGG
GTGTCGATTG CTAATATTGG TCGTACGTTA GAGTCAATGT TAGGCTCACG CTTAGTCACT
ACCTTTATGC GTGATGGTGA AGAATATGAC GTGATTGTCG AAGGTGAACG CAATAACCAA
AATACCGCAG CAGATTTGCA AAATATCTAT GTGCGTTCCG AGCGCAGTAA AGAACTTATT
CCACTCTCCA ACTTAGTGAC TGTGGAAGAG TTTGCCGATG CCAGTTCGCT CAATCGTTAT
AACCGTATGC GAGCTATCAC AATCGAGGCC AGTTTGGCCG ATGGTTATAG CCTAGGTGCT
GCATTAGATG ATCTTAATCA GATGGCGCGT GCTTACTTGC CGGCGGAAGC GGTGATCAGC
TACAAGGGGC AATCCCTCGA TTATCAAGAA TCGGGTAACT CCATGTATTT TGTGTTTTTG
CTCGCTTTAG GCATCGTATT CTTAGTGTTA GCGGCACAGT TTGAAAGCTA TATTCACCCC
ATAGTGATTA TGTTAACTGT GCCGCTGGCA ACGGTTGGTG CGCTAGCGGG CTTGTGGTTT
ACGGGGCAAA GTCTCAATAT TTACAGCCAG ATAGGCATTA TTATGCTGGT AGGGCTAGCC
GCCAAGAATG GTATTTTAAT TGTCGAATTC GCGAACCAAT TAAGGGATAA AGGTGTCGAC
TTTGACCGCG CCATTATCCA AGCGGCGAGC CAAAGATTAC GGCCAATTTT GATGACAGGT
ATTACCACTG CCGCGGGAGC GATTCCCCTT GTGATGGCCG TCGGTGCAGG TGCTGAAACG
CGTTTTGTGA TTGGTGTTGT TGTGCTATCG GGCATTTTGT TGGCGACCTT ATTCACTATC
TTTGTGATCC CAACGGCCTA TGGTTTCTTT GCCCGAAACA GCGGTTCACC AGAGGCCATT
GCCCAGCAGT TAGAAAAGGA ACTGGCTGAA GATTAA
|
|---|
| Protein sequence | MILTDLSVKR PVFASVISLL VVAFGLVSFD KLPLREYPNI DPPIVSIETN YRGASAAVVE
SRITQLIEDR ISGVEGIRHV SSSSSDGRSS VTLEFDISRN IEDAANDVRD RISGLLDNLP
EEADPPEVQK ANGGDEVIMW LNLVSDNMTT LELTDYTNRY LSDRLSVVDG VARIRIGGGK
VYAMRIWLDR QALASRSLTV ADVEAALRAE NVELPAGSIE SKERHFTVRL ERSYRTAEDF
ANLVLTQGND GYLVKLGDVA KVEIGSEEER IMFRGNKEAM IGLGVSKQST ANTLEVARAV
NALIDKINPT LPAGMSIKRS YDSSVFIEAS IKEVYQTLFI AMILVIIVIY LFLGSARAML
IPAITVPVSL LGTFIVLYAL GYTINLLTLL AMILAIGMVV DDAIVMLENI HRRIEEGDSP
LKAAYLGARE VAFAVIATTL VLVSVFMPIT FLEGDLGKLF KEFAVAMSAA VIFSSIVALT
LSPMMCSKLL KPATQDSWLV RKVDGIMASI ARGYQTSLQK AMAKPLLMSV LVLCALGSSF
FLVQKVPQEF APQEDRGSLF LMVNGPQGAS YEYIESYMTE VENRLMPLVD AGDIKRLLIR
APRGFGRAAD FSNGMAIVVL EDWGQRRPIK EVIVDINKRL ADLAGVQAFP VMRQAFGRGV
GKPVQFVIGG PSYEELARWR DIMMEKAAEN PMLLGLDHDY KETKPQLRVV IDRDRAASLG
VSIANIGRTL ESMLGSRLVT TFMRDGEEYD VIVEGERNNQ NTAADLQNIY VRSERSKELI
PLSNLVTVEE FADASSLNRY NRMRAITIEA SLADGYSLGA ALDDLNQMAR AYLPAEAVIS
YKGQSLDYQE SGNSMYFVFL LALGIVFLVL AAQFESYIHP IVIMLTVPLA TVGALAGLWF
TGQSLNIYSQ IGIIMLVGLA AKNGILIVEF ANQLRDKGVD FDRAIIQAAS QRLRPILMTG
ITTAAGAIPL VMAVGAGAET RFVIGVVVLS GILLATLFTI FVIPTAYGFF ARNSGSPEAI
AQQLEKELAE D
|
|---|
| |