Gene Sputcn32_1605 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_1605 
Symbol 
ID5079421 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand+ 
Start bp1828603 
End bp1829037 
Gene Length435 bp 
Protein Length144 aa 
Translation table11 
GC content47% 
IMG OID640498738 
Productbiopolymer transport protein ExbD/TolR 
Protein accessionYP_001183129 
Protein GI146292705 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0848] Biopolymer transport protein 
TIGRFAM ID[TIGR02801] TolR protein 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.0000781876 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAACCAG CTTATCAGCG TAAACGTCGT CGCCCCGTTG CTGAAATTAA CGTGGTGCCT 
TATATCGACG TCATGCTAGT GCTGTTAATT ATTTTTATGG TAACAGCACC CATAGTGACT 
CAAGGCGTTA AAGTTGAGCT GCCTCAAGGG GCGGCGGAAG TGTTACCCAA TGATAGTAAG 
CCACCTATTG TTGCCTCCAT TGATGGCGAC GGTGATTACT TCCTCAATAA AGGTGGTTCG 
AACAATGAAG AAATGGATTT GGAAGAACTT GCTACAGCTG TAGCGGCCAT TATGGTGACA 
GAGCCTGAAC GCCCAGTCGT GGTCAAGGCC GATAGAAATA TTCCTTACGA TAAAGTGATT 
CAGTTGATGG TGACCTTACA AGGTGCAGGC GTACCCTCAG TCGGTTTGAT GACGGATTCA 
CCCAAGGAGA AATAG
 
Protein sequence
MQPAYQRKRR RPVAEINVVP YIDVMLVLLI IFMVTAPIVT QGVKVELPQG AAEVLPNDSK 
PPIVASIDGD GDYFLNKGGS NNEEMDLEEL ATAVAAIMVT EPERPVVVKA DRNIPYDKVI 
QLMVTLQGAG VPSVGLMTDS PKEK