| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1590 |
|---|
| Symbol | |
|---|
| ID | 5079550 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 1808942 |
|---|
| End bp | 1811155 |
|---|
| Gene Length | 2214 bp |
|---|
| Protein Length | 737 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640498723 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_001183114 |
|---|
| Protein GI | 146292690 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAATCTC GTTTCGCCTA TTCATTAATC GCACTCGCTT TAGCTCAACA CTCTTGGGTG
TTTGCCACTG AAAAACCAAT AAAAAATGAC ATCGAGCCTA GCTCGGATAC GGTTCAGTCT
GATGTTATTC CTGCTGCTGA TGCTTCTGAA CCTGACGCTA AGTTAGTGAC GCCCGAACGT
ATTGCTGTCC ATGGCCGCGC AATGCAAATG TACGTCGATA AAGAAACAAC GATTGGTACT
AAGACGGCGA TTAATGTGAT GGAATTGCCG CAGTCTGTGC AAGTGCTGAC CGAGCAGTTA
ATCGTCGACC AAGCCGCGCG CAATATTACC GATTTATATC GCTCTATTGC GGGCGTGAGT
GAGTTCAGTT ATTCCGGCGT GACCTTTCGC GGTTTCCGTG ACGATGCCAA CGTTTTTTAT
GATGGGGTAA GGGGCGATCC CTATTCGGGG TTCTCAGTGC CGCAACTCTT TAATGTGCAG
CGGGTTGAAG TGTTAAAAGG CCCTGCATCC GCACTCTATG GTGGCGGTGA ACCCGGTGGC
ATGATTAACT ATGTCACTAA AAAACCAACC TTTATCGAGA GCAAAGAACT GACATTAAGC
ACCGGCAGCG AGGATATGAT CGGTGGCTCG CTGGATTTCA CCGGCGGCCT AACCCAAAAT
CTCGCCTATC GTTTTGGCGC CTATTATCAG CAGGAAGATA GCTTTCGTAA TAATGCCGAT
AGCCAAAATG CCGAAGTGGC GGGTGGGTTA CTCTACGAAA TCAGTGATGA TACTAAGCTC
ACCACCACCT TCGATATTAT TAAGCAGGAT TTAGGCGGTA ACCGACTTCG CGGTGTTCCC
GTCGATGATG CGGGCAATTT CCTTGTCGCG CCTTCCTATA ATGCCAATGA GAAGAGTGAC
TTCCAGAAGA TGGATGCATT GGTGCTGCAA GCGATTCTCG ATCATCAATT TACCGATAAT
TTCTCGGTCA AGACTCAAGT CCGCTATCTG AATAATGATT CGGATCAGCA ATACCATGAA
TCGAGAGGTT GGGCGACCTT AGATGCCAAT AAAAAGCCCA TTATGGGTGA TGGCACTATT
AAGCGTGAAT ACCGTGTGCA ATCAAGGGCT AATGATGAGA TCAGTTTAAC CAATGATTTT
GTCTACGCAT TCGATGCCTT AGGTTTTGAA CATGAATTCC TGTTCGGCGG TGATTACCAC
TACGTCGAAA CCGAATATCA CTATAAATTG GCGACCTCTA ACGAGGATGT CGGTAACCTG
AATATTTTTG ACCTTAATTA TGGTGAAACC AACCCAAGCA CTTATAACCT AAAAGATAAA
AATACCGATG GTATACGCGC TAATCGCTAT GGCGTTTATG TGCAGGAACA TCTGCACTTT
AACGAACAGT GGTCATTGAT CGCTGGGCTT CGTTTTAGTC AGTTTGATGA ATATGATAAG
GCGACGGGTT TTTCCTTCAG CGATAATGCG ATAACACCAA GGGCAGGGCT TAATTATCGC
CCAATCGATT CAACGTCCTT TTATTTGAAT TACTCAGAGA GCTTTAATCC CACATCTTTA
ACCAATCAAG CTGAGAATAT TGGGGATGGT TTCCTCGATC CTGAAACCGG TAATCAAATT
GAGTTAGGGA TGAAAAATGA ATGGCTTGAT GGCCAGTTTA TGACCACGCT CGCTGTATAT
CGCATTGAAA AGCAAAATGT TGCCCAAGCT AACCCTTTAG ATACTGGCGA TGACGATGGT
ATTCCTGCAA TGCTTAATTT TGGTGAAGTG CGCAGCGAAG GCATTGAATG GACGCTGGTG
GGGGATTTAA CCGATAACCT GACTGTCACG GCAAACTATG CCTATAACGA GACCGAAGTG
ATTAAAGGGG TGACTGATGA CAGTTTAACC AATACCTTCG ATAGTAAACA TTTTGCCAAT
GCGCCGCGTC ATCAAGCGGG GATATGGACC CGTTACGATA TCAATGCACT CAATTCGGCG
ATTGCCTTTG GTATGGATTA CGTGGGTGAG CAGTTCAGCC TCGATGGCCA AACGGTGAAG
CCCCATACGA TTTTTGATAT GAGCTGGACA ACACAGTGGG ATCAAACTCA AGTCCGTTTA
AATCTTAAAA ATATCTTCGA TAAGGAATAT GCCGTCAGTG GCTTTAGTGA GCGTAATGGT
CATTTCCCCG GTGAGCCACG CAATATCACG CTTGAGCTGA GTCATAAGTT TTAA
|
|---|
| Protein sequence | MKSRFAYSLI ALALAQHSWV FATEKPIKND IEPSSDTVQS DVIPAADASE PDAKLVTPER
IAVHGRAMQM YVDKETTIGT KTAINVMELP QSVQVLTEQL IVDQAARNIT DLYRSIAGVS
EFSYSGVTFR GFRDDANVFY DGVRGDPYSG FSVPQLFNVQ RVEVLKGPAS ALYGGGEPGG
MINYVTKKPT FIESKELTLS TGSEDMIGGS LDFTGGLTQN LAYRFGAYYQ QEDSFRNNAD
SQNAEVAGGL LYEISDDTKL TTTFDIIKQD LGGNRLRGVP VDDAGNFLVA PSYNANEKSD
FQKMDALVLQ AILDHQFTDN FSVKTQVRYL NNDSDQQYHE SRGWATLDAN KKPIMGDGTI
KREYRVQSRA NDEISLTNDF VYAFDALGFE HEFLFGGDYH YVETEYHYKL ATSNEDVGNL
NIFDLNYGET NPSTYNLKDK NTDGIRANRY GVYVQEHLHF NEQWSLIAGL RFSQFDEYDK
ATGFSFSDNA ITPRAGLNYR PIDSTSFYLN YSESFNPTSL TNQAENIGDG FLDPETGNQI
ELGMKNEWLD GQFMTTLAVY RIEKQNVAQA NPLDTGDDDG IPAMLNFGEV RSEGIEWTLV
GDLTDNLTVT ANYAYNETEV IKGVTDDSLT NTFDSKHFAN APRHQAGIWT RYDINALNSA
IAFGMDYVGE QFSLDGQTVK PHTIFDMSWT TQWDQTQVRL NLKNIFDKEY AVSGFSERNG
HFPGEPRNIT LELSHKF
|
|---|
| |