Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_1358 |
Symbol | lpxD |
ID | 5080553 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 1539889 |
End bp | 1540914 |
Gene Length | 1026 bp |
Protein Length | 341 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640498490 |
Product | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase |
Protein accession | YP_001182885 |
Protein GI | 146292461 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1044] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase |
TIGRFAM ID | [TIGR01853] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000000561491 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAGAGTG TGACTTTAAA AGAGCTCAGT TTGCTGTTAG ACGGTGTTAT TCAAGGGGAC GATACGTTGG TGATTAACAG CGTAGCAACC TTAGAAAATG CGAAATCAGG CCAACTCTCT TTTTTAGCCA ACAGTAAATA CCGCTCTCAG CTTGAGGCAA CTCAAGCGAG TGCGGTGTTA TTGTCCGCTA AAGAGGCGCA GGAGTATCAA GGCACTGCGT TAATTGTAAA AGACCCTTAT GTGGCTTTTG CCCGTACAGC CCAATTTTTA GATACTACGC CTCAAGCGGC CGTTGGTATT CATCCTTCAG CGCAAATTGA TCCTTCAGCT CGTTTAGGCG AAGGGGTGGC TATTGGTGCC AATGCGGTGA TCGGGGCTAA TGTTATCCTC GGCGAGAATG TGCAGGTCGG TGCAGGCACT GTGATTGGCC AAGATGTGAT TATTGGTTCT AACACTCGTC TGTGGGCGAA TGTGACTATC TACCATGATG TGCATTTAGG TCAACATTGT ATTATCCATT CTGGCGCGGT ATTGGGATCA GATGGTTTTG GTTATGCTAA TGAGCGTGGT CAGTGGGTTA AGATCCCACA AACCGGTGGT GTACGTATCG GCGATCGGGT TGAGATTGGT GCGAGTACAA CGGTAGATCG CGGCGCTTTA GGCCATACCG AGATCCATAA CGGCGTAATT ATCGATAATC AAGTGCAGGT TGCCCATAAC GATATCATAG GTGAGAATAC TGCCATTGCG GGAAGTACCA CTATTGCTGG CAGTGTGACT ATTGGTAAGT ATTGTATTAT TGGTGGTAAT TGTGCCATCG CGGGTCACCT ATCGATTACT GATGGTGTAC ATGTATCGGG CTCAACCAAT ATTACTGGAA ATATGCGTGA ACCGGGTTTG TATTCCTCTG CGACTGTTGC AATGGAAAAT AAGGTTTGGC GTAAAAATAC AGTTCGCTTC CGTCAATTGG ATGAGTTGTT CCTGCGCGTT AAAACGCTGG AAAAGAATTT AAAAACCCCA GATTAA
|
Protein sequence | MKSVTLKELS LLLDGVIQGD DTLVINSVAT LENAKSGQLS FLANSKYRSQ LEATQASAVL LSAKEAQEYQ GTALIVKDPY VAFARTAQFL DTTPQAAVGI HPSAQIDPSA RLGEGVAIGA NAVIGANVIL GENVQVGAGT VIGQDVIIGS NTRLWANVTI YHDVHLGQHC IIHSGAVLGS DGFGYANERG QWVKIPQTGG VRIGDRVEIG ASTTVDRGAL GHTEIHNGVI IDNQVQVAHN DIIGENTAIA GSTTIAGSVT IGKYCIIGGN CAIAGHLSIT DGVHVSGSTN ITGNMREPGL YSSATVAMEN KVWRKNTVRF RQLDELFLRV KTLEKNLKTP D
|
| |