| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1345 |
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| Symbol | dapD |
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| ID | 5080972 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 1524766 |
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| End bp | 1525590 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640498477 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_001182872 |
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| Protein GI | 146292448 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.27962 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGGCTT TACGCCAACG TATTGAGGCG GCTTTTGAAG CGCGCGCCGA CATCACACCA
AGTACAGTCG ACGCCAATGT GCGTAGCGAT GTGCAACATG TCATCAATAT GCTCGACAAA
GGTGAAGTCC GTGTCGCCGA GAAAATCGAC GGCCAATGGC ATGTGCACCA ATGGCTGAAA
AAGGCAGTAT TACTGTCCTT CCGTATTTTC GATAATGCGG TTATCGATGG CGCAGAAACC
AAATACTTCG ACAAAGTGCC GTTAAAATTT GCCGAGTACG ATGAAGCCCG CTTTAAAGCG
GAAGCCATTC GTGTGGTGCC TTCGGCGACA GTACGTAAAG GCTCATTTAT CGGTAAAAAC
ACAGTGTTGA TGCCATCCTA TGTGAACTTA GGCGCCTATG TTGATGAAGG CACTATGGTT
GACACTTGGG CCACTGTGGG TTCATGTGCA CAAATCGGTA AAAACGTGCA TTTATCCGGT
GGAGTAGGCA TTGGTGGGGT ACTTGAGCCA TTGCAAGCTG GGCCGACCAT CATTGAAGAT
AACTGCTTTA TCGGCGCGCG CTCTGAGATT GTTGAAGGCG TAGTAGTTGA AGAAGGCTCA
GTGATTTCTA TGGGCGTGTA TATCGGCCAA AGCACTCGAA TTTACGATCG CGAAACTGGC
GAAGTGCATT ATGGCCGTGT ACCTGCGGGC TCTGTGGTTG TCTCTGGCAA TCTACCCTCA
GCCTGTGGCA AGTACAGCCT GTATGCTGCG ATTATCGTTA AGAAAGTGGA TGCAAAAACC
CGCGGAAAAG TGGGTATCAA CGAGTTATTA CGCATAGTGG ATTAG
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| Protein sequence | MEALRQRIEA AFEARADITP STVDANVRSD VQHVINMLDK GEVRVAEKID GQWHVHQWLK
KAVLLSFRIF DNAVIDGAET KYFDKVPLKF AEYDEARFKA EAIRVVPSAT VRKGSFIGKN
TVLMPSYVNL GAYVDEGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQAGPTIIED
NCFIGARSEI VEGVVVEEGS VISMGVYIGQ STRIYDRETG EVHYGRVPAG SVVVSGNLPS
ACGKYSLYAA IIVKKVDAKT RGKVGINELL RIVD
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