| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1274 |
|---|
| Symbol | |
|---|
| ID | 5081001 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 1434555 |
|---|
| End bp | 1435175 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640498406 |
|---|
| Product | heat shock protein GrpE |
|---|
| Protein accession | YP_001182801 |
|---|
| Protein GI | 146292377 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0576] Molecular chaperone GrpE (heat shock protein) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000000125429 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAACG AATCGATTAA AGCAGAACAG GATCTGATCC AAGAGGGTGT AGAGTCTGAA
GTATCTACCG CAGAAGCAAG TCTTGTTGAT GAGCTTACCC AGGCCAATTT CCGTATTGAA
GAGTTGGAAC AGTTACTCGC TGACGCTTTG GCGAAAGTTG AAGAGCAGAA AGATTCCGTC
ATCCGCGCCG CCGCCGAGGT CGATAATATT CGTCGCCGTG CCGCCATGGA TGTGGAAAAG
GCCAATAAAT TTGCATTGGA AAAGTTCGCC AATGAATTGT TACCAGTGCT TGATAATATG
GAGCGCGCTC TGATGGGGAC AAACCCAGAA GATGAAGCGA CTAAAGCAAT TTATCAAGGC
GTTGAGTTAA CGCAAAAAAG CTTACTTACT GCAGTGGCTA AATTTGGTGT TAAACAAATT
GATCCACAAG GAGAGTCATT TAACCCTGAT CAACATCAAG CCATTGGCAT GCAGCCAAGT
GCGGATTTTC CTGCAAATAC AGTGATGTTA GTGATGCAAA AGGGCTACGA GCTAAATAGT
CGTTTACTGC GTCCTGCTAT GGTAATGGTA TCGCAGGGCG GCCCTAGCCA AGAAACGGCG
ACCATTGATA TTGAGGCGTA A
|
|---|
| Protein sequence | MSNESIKAEQ DLIQEGVESE VSTAEASLVD ELTQANFRIE ELEQLLADAL AKVEEQKDSV
IRAAAEVDNI RRRAAMDVEK ANKFALEKFA NELLPVLDNM ERALMGTNPE DEATKAIYQG
VELTQKSLLT AVAKFGVKQI DPQGESFNPD QHQAIGMQPS ADFPANTVML VMQKGYELNS
RLLRPAMVMV SQGGPSQETA TIDIEA
|
|---|
| |