Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_1259 |
Symbol | |
ID | 5080986 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 1414742 |
End bp | 1416091 |
Gene Length | 1350 bp |
Protein Length | 449 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640498391 |
Product | multi anti extrusion protein MatE |
Protein accession | YP_001182786 |
Protein GI | 146292362 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACAGCAG TATCCCTACC CCAGACGGAT CAACATTTAC TCCAAGAGCC GATTTCTAAG CTTTTTTGGC GTTATACCAT ACCCACCATT GCCTCCATGT TGGTAACGGG CGTGTATGTG ACTATTGATG GGATTTTCGT GGGGCACTAT TTAGGTGAAG CGGGGCTAGC AGGGATGATG TTAGCTTACC CAGTCGGGGC CATTTTATAT GCCATCGGCG CTATGATAGG CATGGGTAGT GCAGCATTAG TGTCAATCAA TCTTGGTCAA GGTAACGTGG TTAAAGCCCG CAAACTCTTG GGTAATGCCT TTAGTTTGTG TTTATTGGCA GGTGGATTTT TTGCCCTTAT GGGCGGATTA TTTTCACGGG ATATTTTAAT TGCCCTTGGT GCACAAGGGG ATATCCTCGA AAATGCCAAT CAATATTTAT TCTGGTATTT CGCCCTGTGC CATTTCCCCA TCATCTCAAT GGCCTTTACC ACACTTTTAC GTAATGATGG TCGGCCATCT ATGGTGACCT TTGTGTTAAT TTTAGGGGGG GTACTCAACA CTTTCTTAGA TTGGTTATTT ATCGTGGTAT TTCCCTTTGG TTTGGCGGGC GCCGCGATTG CGACCATGTT AGCGCAGGCT GTGACGGGCT TACTGTGTTT ACAGCATTTT TTTGGTTCTC GTACCCAGCT TAAAATCAAC TTAGAGCAAA TGAAGCTTAA GTTTGATAAT TGTGTGAATA TTGCCCGCGT GGGTTTACCT AGCTTTTTGA TGAACCTTTA TTTATCAATT GTGCTCACTC TGCACAACAC GGCATTTTTA TGGGTTGGTG GGCCATTGCA CGTGGCGGCC TACGGGGTGG TGAGTTACAC CGAAGCATTT TTCTATCTGA TTTTTGAGGG CATAGCCCTT GGCACTCAAC CTATCTATAG CTTCAACGCG GGTGCAGGGC GTTTTGACAG AGTTAAACAA GCGCGCAATA TCGCCTTTAC GATGACATTA CTTACAGCAG CCTTAGGGCT TGCCTTGATT TACTCTCGCC CTGAGTGGTT AGTGTATTTA TTTGCCGGTG ATAACCCGAA CCTAACACCT GTGGCGATTG AAGGCATGCG TTGGTATTTC TGGGGCTTAC CTATGGAAGG GTTAATCTTA GTTGGGGCAA GTTTTTTCCA AGCCATTAAT TGTTCAAAAC AGGCGTCTAT CTTGACTGGC ACTAAACTTG TCCTGATCGC GGCCATTATT TACTGTTTTG CTTGGGCATT TGGGGTTATA GGGGTTTGGA TATCGCTCGC GACTTGCAGT ACTTTGCTGA CCCTATGGAT GTTCTATGCA ATGAAGAAGG TGGATAACCG TTTACCTTAG
|
Protein sequence | MTAVSLPQTD QHLLQEPISK LFWRYTIPTI ASMLVTGVYV TIDGIFVGHY LGEAGLAGMM LAYPVGAILY AIGAMIGMGS AALVSINLGQ GNVVKARKLL GNAFSLCLLA GGFFALMGGL FSRDILIALG AQGDILENAN QYLFWYFALC HFPIISMAFT TLLRNDGRPS MVTFVLILGG VLNTFLDWLF IVVFPFGLAG AAIATMLAQA VTGLLCLQHF FGSRTQLKIN LEQMKLKFDN CVNIARVGLP SFLMNLYLSI VLTLHNTAFL WVGGPLHVAA YGVVSYTEAF FYLIFEGIAL GTQPIYSFNA GAGRFDRVKQ ARNIAFTMTL LTAALGLALI YSRPEWLVYL FAGDNPNLTP VAIEGMRWYF WGLPMEGLIL VGASFFQAIN CSKQASILTG TKLVLIAAII YCFAWAFGVI GVWISLATCS TLLTLWMFYA MKKVDNRLP
|
| |