| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1170 |
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| Symbol | trmD |
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| ID | 5081580 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 1311125 |
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| End bp | 1311871 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640498301 |
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| Product | tRNA (guanine-N(1)-)-methyltransferase |
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| Protein accession | YP_001182697 |
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| Protein GI | 146292273 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
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| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000107568 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTGGTTAG GGGTAATAAC CCTGTTCCCA GAGATGTTTC GTGCCGTTAC AGACTTTGGT
GTTACGGGTC GAGCCGTGAA AAACGGCCTG CTTGAGTTGC ACACGTGGAA TCCCCGTGAT
TTCACCCATG ATAGACATAA TACGGTAGAT GACAGGCCTT ACGGCGGTGG TCCCGGCATG
TTGATGATGG TGCAACCCTT ACGCGATGCC ATTCATGCTG CGAAAGCAGC TGCAGGCGAA
GAGGCAAAGG TGATTTATTT GTCACCTCAA GGACGCAAGC TGGATCAGCA AGGCGTGACT
GAGTTGGCTA AATCATCCCG GTTGATTTTG GTGTGTGGTC GGTACGAAGG TATTGATGAG
CGCATCATTC AAACGGAAGT GGATGAAGAA TGGTCGGTTG GGGATTACGT GCTTTCGGGC
GGCGAATTAC CTGCGATGAC CATGATAGAT GCAGTATCGA GATTGGTTCC TGGTGTGCTA
GGAAAACAAG CTTCGGCGGA GCAAGATTCT TTCTCCGACG GTTTACTGGA TTGTCCTCAT
TACACTCGCC CTGAAAGCCT TGATGGACTC GATGTACCCG CAGTGCTGCT AAGTGGCAAC
CACGAACAAA TTAGACTCTG GCGTTTACAG CAAAGCCTTG GTAGGACTTT ACTGCGACGA
CCAGAATTAT TGCAAAATCT AGCTCTGACT GACGAACAAT CGACTCTTTT AGCGCAGTTC
GTTGAAGCAA TGGACAAGCA TGCTTAG
|
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| Protein sequence | MWLGVITLFP EMFRAVTDFG VTGRAVKNGL LELHTWNPRD FTHDRHNTVD DRPYGGGPGM
LMMVQPLRDA IHAAKAAAGE EAKVIYLSPQ GRKLDQQGVT ELAKSSRLIL VCGRYEGIDE
RIIQTEVDEE WSVGDYVLSG GELPAMTMID AVSRLVPGVL GKQASAEQDS FSDGLLDCPH
YTRPESLDGL DVPAVLLSGN HEQIRLWRLQ QSLGRTLLRR PELLQNLALT DEQSTLLAQF
VEAMDKHA
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