Gene Sputcn32_1169 details

Gene Information

• Locus tag: Sputcn32_1169
• Symbol: rimM
• ID: 5081579
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella putrefaciens CN-32
• Kingdom: Bacteria
• Replicon accession: NC_009438
• Strand: +
• Start bp: 1310579
• End bp: 1311109
• Gene Length: 531 bp
• Protein Length: 176 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 640498300
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_001182696
• Protein GI: 146292272
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.0000000549178
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAGTA ACCAACAGCC AGTCGTACTG GGGAAATTAG GCTCCTGTCA TGGCATTAAA 
GGTTGGCTGA GAATCACCGC CTATACCGAT TCTGTTGAAG GTATCTTTGA TTATTCACCT 
TGGCTTATTA AAGAAAATGG TGAATGGCGG GAAGTAAAGG TCACTCAGTG GCGATACCAA 
GGTAAGGCAG TTGTTGCCGA GCTTGAAGGT GTCAATACCC GGGAGCAAGC GCAAATGCTC 
ACAAATTGTG AGATAGCGAT TTTACCGGAA CAGATGGATG CATTGCCAGA AGATGAATTC 
TATTGGCGTG ATCTTATCGG TTGCGAAGTG GTCAATACAA CAGGTTATAA CATGGGGATC 
GTCGATCAGA TCGTGGAAAC AGGATCGAAT GACGTATTAC TGGTTAAAGC CAACGCTAAA 
GATAGTTTCG GCAAAGTGGA ACGTATGATC CCCTTTGTCC CTGAGCAATT CATCAAAACG 
GTGGATGTGC AAGGTAAACA GATTTTAGTG GATTGGGATC CTGACTTCTA A 

 

Protein sequence

MSSNQQPVVL GKLGSCHGIK GWLRITAYTD SVEGIFDYSP WLIKENGEWR EVKVTQWRYQ 
GKAVVAELEG VNTREQAQML TNCEIAILPE QMDALPEDEF YWRDLIGCEV VNTTGYNMGI 
VDQIVETGSN DVLLVKANAK DSFGKVERMI PFVPEQFIKT VDVQGKQILV DWDPDF