Gene Sputcn32_1153 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_1153 
Symbol 
ID5081663 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand
Start bp1296103 
End bp1296681 
Gene Length579 bp 
Protein Length192 aa 
Translation table11 
GC content44% 
IMG OID640498284 
ProductRNA polymerase sigma factor RpoE 
Protein accessionYP_001182680 
Protein GI146292256 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02939] RNA polymerase sigma factor RpoE
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value6.09864e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGGAC AAATAAGTGA TCAACAATTA GTTGAGCGCG TACAACGGGG AGATAAAAAC 
GCTTTTAACC TGTTAGTGCT TAAATATCAA AGTAAAGTTA TCAGCTTGAT TTCGCGATAC
GTACGTAATC AAGCAGACGT TGCCGATGTA GCACAGGAAG CGTTTATCAA AGCCTATAGA
GCTTTGCCAA ACTTTCGTGG AGAAAGTGCG TTTTATACCT GGTTGTACCG TATTGCAGTA
AACACTGCAA AAAATTATCT CGTATCACAG GGGCGTAGAG CGCCTGCAAA TGACGTTGAT
GCAGAAGATG CCGAATATTA TGAAGGTAGT GATGCACTGA AGGAGTTCGC CTCCCCAGAA
CGGCTAATGT TATCGGATGA AATCAAAAAA GTGATCTTCG ATACCTTAGA AACACTGCCA
GAAGAATTGC GAATGGCTAT CTCGTTGCGT GAACTCGATG GTATGAGTTA CGAAGATATT
GCCATAGTCA TGGATTGCCC CGTTGGGACC GTAAGATCGC GTATCTTCCG TGCCCGAGAG
GCTATCGATA AAAAACTCCA GCCTCTACTG GAAGAGTAA
 
Protein sequence
MSGQISDQQL VERVQRGDKN AFNLLVLKYQ SKVISLISRY VRNQADVADV AQEAFIKAYR 
ALPNFRGESA FYTWLYRIAV NTAKNYLVSQ GRRAPANDVD AEDAEYYEGS DALKEFASPE
RLMLSDEIKK VIFDTLETLP EELRMAISLR ELDGMSYEDI AIVMDCPVGT VRSRIFRARE
AIDKKLQPLL EE