Gene Sputcn32_1104 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_1104 
Symbol 
ID5081713 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand
Start bp1242929 
End bp1244779 
Gene Length1851 bp 
Protein Length616 aa 
Translation table11 
GC content46% 
IMG OID640498235 
ProductRpoD family RNA polymerase sigma factor 
Protein accessionYP_001182631 
Protein GI146292207 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0640269 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATATCTA TGGATCATAC TCCGCAGTCG CAACTCAAGC TGTTGCTTGC CAAAGGTAAA 
GAGCAAGGTT ACTTAACCTA TGCAGAAGTG AACGATCACT TACCTGCAGA CATGGTCGAT
TCTGACCAGA TCGAAGATAT TATCCAGATG ATAAATGACA TGGGTATTCG GGTATTTGAA
GAAGCTCCCG ATGCCGATGA CATGATGATG TCGGAAGACA ACACAGACGA AGATGCAGCA
GAAGAAGCCG CGGCCGCCCT AGCCACAGTT GAAAGTGAGC TTGGCCGCAC AACGGATCCA
GTACGCATGT ATATGCGTGA AATGGGTACG GTTGAGCTTC TGACTCGTGA AGGCGAAATT
GTGATCGCCA AACGCATTGA AGAAGGCATT AATACCGTTC AAAGCTCTGT CGCCGAATAC
CCACAAGCGA TCGCGATGAT CCTTGAACAA TTCGACCAAT TCGAAGCCGA TGAACTGCGC
CTGTCTGATA TTATCTCTGG ATTTGTCAAC CCGGATGAAG AAGACGTAGC ACCCACTGCA
ACACATATTG GCTCTGAACT GTCAGATGAA GACCTCGATG ATGAGGACGA TGAAGATGAA
GACGATGAAG ACGCAGATGA AGAAGATGAT GCCAACAAAG GCCCAGATCC TGAAGAAGCC
CGCGAACGCT TTAGTCAACT AAGAGCCGCC TATGAAAATG CGCTGAAAAT CATCGAAGCT
AAAGGACGTG AACATCCAGA GTCTGTCAAA GCGCTTTTTG AAATCGGTGA AATCTTCAAA
GAATTCCGTT TAGTCCCTAA ACAATTTGAT CGTTTAGTGA AAAGCATGCG TTCTATGATG
GATCGCGTAC GCGTACAAGA ACGCTTGGCG ATGAAGCTTT GTGTTGAACA AGCTAAAATG
CCAAAGAAAA ACTTTGTGAA GTTTTTCACT GGAAATGAAA CTAATCTCGA TTGGTTCCAT
GCAGAAAAAG CCTCAAACAA ACCTTATGCC GAAGGCCTAA GAATGGTTGA GGAAGACGTA
CTACGTTGCC GTAGCAAGCT TGCCGCCGTT GAAGAAGAAA CCGGCTTAGC TATTTCAGCA
ATCAAAGATA TCAACCGTCG CATGTCAATT GGTGAAGCTA AAGCACGCCG TGCGAAGAAA
GAAATGGTTG AGGCCAACTT ACGTCTGGTT ATTTCTATCG CGAAGAAATA CACCAACCGC
GGTCTGCAAT TCTTAGATCT TATCCAAGAA GGTAATATCG GCTTGATGAA AGCCGTGGAT
AAGTTCGAAT ACCGTCGTGG TTACAAGTTC TCGACCTATG CCACTTGGTG GATCCGTCAG
GCGATTACCC GTTCTATCGC TGACCAAGCG CGTACCATCC GTATTCCGGT GCACATGATC
GAAACGATCA ACAAGCTAAA CCGTATTTCT CGTCAAATGC TACAGGAAAT GGGCCGTGAG
CCGTCCCCTG AAGAACTGGC AGAACGTATG ATGATGCCGG AAGACAAGAT CCGTAAAGTG
CTTAAAATCG CTAAAGAACC TATCTCCATG GAAACCCCTA TTGGTGACGA TGAAGATTCG
CATTTAGGTG ATTTTATCGA GGATACCACC CTCGAATTAC CGCTTGATAG CGCCACCAGC
GAAAGTTTGA AGAGTGCAAC CCATGAAGTG CTCGCAGGCT TAACAGCCCG TGAAGCCAAA
GTATTGCGCA TGCGTTTTGG TATCGATATG AACACTGACC ACACGCTTGA AGAGGTGGGT
AAACAGTTTG ACGTTACCCG TGAACGTATT CGTCAAATTG AAGCTAAAGC ATTACGTAAG
TTACGCCACC CTTCACGTTC AGAGATCTTG AAATCTTTCT TAGATGAATA G
 
Protein sequence
MISMDHTPQS QLKLLLAKGK EQGYLTYAEV NDHLPADMVD SDQIEDIIQM INDMGIRVFE 
EAPDADDMMM SEDNTDEDAA EEAAAALATV ESELGRTTDP VRMYMREMGT VELLTREGEI
VIAKRIEEGI NTVQSSVAEY PQAIAMILEQ FDQFEADELR LSDIISGFVN PDEEDVAPTA
THIGSELSDE DLDDEDDEDE DDEDADEEDD ANKGPDPEEA RERFSQLRAA YENALKIIEA
KGREHPESVK ALFEIGEIFK EFRLVPKQFD RLVKSMRSMM DRVRVQERLA MKLCVEQAKM
PKKNFVKFFT GNETNLDWFH AEKASNKPYA EGLRMVEEDV LRCRSKLAAV EEETGLAISA
IKDINRRMSI GEAKARRAKK EMVEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD
KFEYRRGYKF STYATWWIRQ AITRSIADQA RTIRIPVHMI ETINKLNRIS RQMLQEMGRE
PSPEELAERM MMPEDKIRKV LKIAKEPISM ETPIGDDEDS HLGDFIEDTT LELPLDSATS
ESLKSATHEV LAGLTAREAK VLRMRFGIDM NTDHTLEEVG KQFDVTRERI RQIEAKALRK
LRHPSRSEIL KSFLDE