Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_1104 |
Symbol | |
ID | 5081713 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 1242929 |
End bp | 1244779 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640498235 |
Product | RpoD family RNA polymerase sigma factor |
Protein accession | YP_001182631 |
Protein GI | 146292207 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0640269 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGATATCTA TGGATCATAC TCCGCAGTCG CAACTCAAGC TGTTGCTTGC CAAAGGTAAA GAGCAAGGTT ACTTAACCTA TGCAGAAGTG AACGATCACT TACCTGCAGA CATGGTCGAT TCTGACCAGA TCGAAGATAT TATCCAGATG ATAAATGACA TGGGTATTCG GGTATTTGAA GAAGCTCCCG ATGCCGATGA CATGATGATG TCGGAAGACA ACACAGACGA AGATGCAGCA GAAGAAGCCG CGGCCGCCCT AGCCACAGTT GAAAGTGAGC TTGGCCGCAC AACGGATCCA GTACGCATGT ATATGCGTGA AATGGGTACG GTTGAGCTTC TGACTCGTGA AGGCGAAATT GTGATCGCCA AACGCATTGA AGAAGGCATT AATACCGTTC AAAGCTCTGT CGCCGAATAC CCACAAGCGA TCGCGATGAT CCTTGAACAA TTCGACCAAT TCGAAGCCGA TGAACTGCGC CTGTCTGATA TTATCTCTGG ATTTGTCAAC CCGGATGAAG AAGACGTAGC ACCCACTGCA ACACATATTG GCTCTGAACT GTCAGATGAA GACCTCGATG ATGAGGACGA TGAAGATGAA GACGATGAAG ACGCAGATGA AGAAGATGAT GCCAACAAAG GCCCAGATCC TGAAGAAGCC CGCGAACGCT TTAGTCAACT AAGAGCCGCC TATGAAAATG CGCTGAAAAT CATCGAAGCT AAAGGACGTG AACATCCAGA GTCTGTCAAA GCGCTTTTTG AAATCGGTGA AATCTTCAAA GAATTCCGTT TAGTCCCTAA ACAATTTGAT CGTTTAGTGA AAAGCATGCG TTCTATGATG GATCGCGTAC GCGTACAAGA ACGCTTGGCG ATGAAGCTTT GTGTTGAACA AGCTAAAATG CCAAAGAAAA ACTTTGTGAA GTTTTTCACT GGAAATGAAA CTAATCTCGA TTGGTTCCAT GCAGAAAAAG CCTCAAACAA ACCTTATGCC GAAGGCCTAA GAATGGTTGA GGAAGACGTA CTACGTTGCC GTAGCAAGCT TGCCGCCGTT GAAGAAGAAA CCGGCTTAGC TATTTCAGCA ATCAAAGATA TCAACCGTCG CATGTCAATT GGTGAAGCTA AAGCACGCCG TGCGAAGAAA GAAATGGTTG AGGCCAACTT ACGTCTGGTT ATTTCTATCG CGAAGAAATA CACCAACCGC GGTCTGCAAT TCTTAGATCT TATCCAAGAA GGTAATATCG GCTTGATGAA AGCCGTGGAT AAGTTCGAAT ACCGTCGTGG TTACAAGTTC TCGACCTATG CCACTTGGTG GATCCGTCAG GCGATTACCC GTTCTATCGC TGACCAAGCG CGTACCATCC GTATTCCGGT GCACATGATC GAAACGATCA ACAAGCTAAA CCGTATTTCT CGTCAAATGC TACAGGAAAT GGGCCGTGAG CCGTCCCCTG AAGAACTGGC AGAACGTATG ATGATGCCGG AAGACAAGAT CCGTAAAGTG CTTAAAATCG CTAAAGAACC TATCTCCATG GAAACCCCTA TTGGTGACGA TGAAGATTCG CATTTAGGTG ATTTTATCGA GGATACCACC CTCGAATTAC CGCTTGATAG CGCCACCAGC GAAAGTTTGA AGAGTGCAAC CCATGAAGTG CTCGCAGGCT TAACAGCCCG TGAAGCCAAA GTATTGCGCA TGCGTTTTGG TATCGATATG AACACTGACC ACACGCTTGA AGAGGTGGGT AAACAGTTTG ACGTTACCCG TGAACGTATT CGTCAAATTG AAGCTAAAGC ATTACGTAAG TTACGCCACC CTTCACGTTC AGAGATCTTG AAATCTTTCT TAGATGAATA G
|
Protein sequence | MISMDHTPQS QLKLLLAKGK EQGYLTYAEV NDHLPADMVD SDQIEDIIQM INDMGIRVFE EAPDADDMMM SEDNTDEDAA EEAAAALATV ESELGRTTDP VRMYMREMGT VELLTREGEI VIAKRIEEGI NTVQSSVAEY PQAIAMILEQ FDQFEADELR LSDIISGFVN PDEEDVAPTA THIGSELSDE DLDDEDDEDE DDEDADEEDD ANKGPDPEEA RERFSQLRAA YENALKIIEA KGREHPESVK ALFEIGEIFK EFRLVPKQFD RLVKSMRSMM DRVRVQERLA MKLCVEQAKM PKKNFVKFFT GNETNLDWFH AEKASNKPYA EGLRMVEEDV LRCRSKLAAV EEETGLAISA IKDINRRMSI GEAKARRAKK EMVEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD KFEYRRGYKF STYATWWIRQ AITRSIADQA RTIRIPVHMI ETINKLNRIS RQMLQEMGRE PSPEELAERM MMPEDKIRKV LKIAKEPISM ETPIGDDEDS HLGDFIEDTT LELPLDSATS ESLKSATHEV LAGLTAREAK VLRMRFGIDM NTDHTLEEVG KQFDVTRERI RQIEAKALRK LRHPSRSEIL KSFLDE
|
| |