Gene Sputcn32_1021 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_1021 
Symbol 
ID5081720 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand
Start bp1134461 
End bp1135222 
Gene Length762 bp 
Protein Length253 aa 
Translation table11 
GC content42% 
IMG OID640498149 
Productputative lipoprotein 
Protein accessionYP_001182549 
Protein GI146292125 
COG category[R] General function prediction only 
COG ID[COG4105] DNA uptake lipoprotein 
TIGRFAM ID[TIGR03302] outer membrane assembly lipoprotein YfiO 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.5232e-06 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTATAAAT TTTCCAAAGG CGTTACCTTA GTCCTATTTT CACTAGCGTT ATCAGCCTGT 
AGCAGCAGCC CTGATGATAG CGATATTGCA GCCAAAACCT CACCTGATGT GCTTTATTCT
CAGGCAAGAA CCTCCATGGA GCTTGGTAAT TACGCTAAAG CTGTCCGTTC TTTGGAAGCG
CTAGACTCTC GCTTCCCTTT CGGACCGCAT AAAACCCAAG TCCAATTAGA CTTGATTTAT
GCTTATTACA AAATGGATGA TGTCGCTTCT GGTATCGCCA ATATAGACAG ATTTATCCGT
CTTAACCCAA CCCATCCTAA TATCGACTAT GTCTACTATA TGCGAGGACT GGTCAACATG
CAGGCTGATA ACTATCTATT CCATGATATG TTGAGTATTG ATAGAACTGA CCGCGATCCT
AAAAATGCCC AAGATGCCTT TAAAGATTTT GACCGTTTAA TCAAAACCTA TCCTAACAGC
AAATATGCTG CTGATGCACA AAAGCGTATG TTTTCGCTGA AAAATCGCTT GGCAAAATAT
TCCATTCAAG TTGCCGAATA TTATCTCAAA ATGAACGCTT GGAGCGCCGC GGCAATCCGA
GCTCAATCAG TACTAGAAAC ATATCCTGGC ACCCCTTCAA CAGAGCGGGC CTTAGAAATA
ATGATAGAAG CTTACGGCGA ATTAGGTCAG AACCAGCTGA AGCAAAACGT GCTCATGGTA
ATGCAAGCTA ACTATCCAAA CAATGAAATC TTATCAAACT AG
 
Protein sequence
MYKFSKGVTL VLFSLALSAC SSSPDDSDIA AKTSPDVLYS QARTSMELGN YAKAVRSLEA 
LDSRFPFGPH KTQVQLDLIY AYYKMDDVAS GIANIDRFIR LNPTHPNIDY VYYMRGLVNM
QADNYLFHDM LSIDRTDRDP KNAQDAFKDF DRLIKTYPNS KYAADAQKRM FSLKNRLAKY
SIQVAEYYLK MNAWSAAAIR AQSVLETYPG TPSTERALEI MIEAYGELGQ NQLKQNVLMV
MQANYPNNEI LSN