| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1010 |
|---|
| Symbol | |
|---|
| ID | 5081812 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 1124766 |
|---|
| End bp | 1125479 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640498135 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_001182538 |
|---|
| Protein GI | 146292114 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000199702 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGCC CACAAGCATC CCACAGAGTG TTATTGGTTG AAGACGATGT CCGTCTGGCA
AATTTAATCG TCGATTACTT AAAATCCCAC GGCATGCATG TCGAAGTGGA ACGCCGCGGC
GATACTGTTT TAACGCGTTT AATCAACTAT AAGCCCGATA TCATACTGTT AGATATTATG
CTGCCAGGCA TGGATGGCCT GAGCCTGTGC GAAAAATTAC CTGACTATTT TGCAGGTCCA
ATACTGTTGA TGAGCGCGCT TGGTTCGACT GAAGATCAAA TCAAAGGATT AGAATTGGGC
GCCGATGATT ATGTGGTCAA GCCCGTTGAT CCTGCGCTAT TAGTGGCAAG AATTCACAAC
TTACTACGCC GTCAAAATCA ACCACCACAG GCCGAATCCC ATTGTTTAAC CTTTGGCAAA
CTCAGTATCG ATCCGCATAC CCATGCCATT AGACTTGACG ATAAAGAAGT CGATTTAACC
AGCCACGAAT TTGAGCTGCT ATGGTTGCTG GCCTCACAGG CGGGACAAGT GCTAAGTCGC
CAGTACATAT ACCAGCTACT GCTCAATATT GACTTTGACG GTAAAGATCG AAAAATCGAT
GTGCGGATCT CAAGACTTCG TAAAAAACTC AACGATAATA TTGAGACACC TTTTAGAATT
AAAACCGTTT GGGGACAAGG TTATCTATTT GCCCCAGAAG CTTGGAATAA CTAA
|
|---|
| Protein sequence | MTSPQASHRV LLVEDDVRLA NLIVDYLKSH GMHVEVERRG DTVLTRLINY KPDIILLDIM
LPGMDGLSLC EKLPDYFAGP ILLMSALGST EDQIKGLELG ADDYVVKPVD PALLVARIHN
LLRRQNQPPQ AESHCLTFGK LSIDPHTHAI RLDDKEVDLT SHEFELLWLL ASQAGQVLSR
QYIYQLLLNI DFDGKDRKID VRISRLRKKL NDNIETPFRI KTVWGQGYLF APEAWNN
|
|---|
| |