| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1000 |
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| Symbol | |
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| ID | 5081766 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 1113688 |
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| End bp | 1115412 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640498125 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001182528 |
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| Protein GI | 146292104 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATCTTC AGCCTTTTTG CTTTACCTCT TTCACACAAG CCATTGATGC CTATGCCCTA
CCGCAGCGTT TTACCTTTCC TTTCTATTAC GAACCGCATC CACTGTGCGT GATCGCTGCC
AACGAATTAC AACACCACCT TGAGACTCAA AATGATTGGC AACATAACTT TGGCCTAACG
GGTGAGTTAA CCGGTGCCAT AGGTAAAATG TTTGGTGTGC TTTTAGTACA AGATCCGCAG
GGCGAAGTAG GCTATTTGTC GGCATTTTCG GGTAAGTTAG CCGAGCAAAA CCATTGGCCA
CGCTTCGTTC CACCTGTGTT TGATATGCTG GCTAAGGATA ATTTTTTCCA CGCAGAAAAT
CTGCAAATCA ACCAAATTAA CGAGCAGCTA CTTGCAGTAG AAAATCACCC CGATATTCCT
CGGCTATTGA GCGAACTCAA CGCTGAGCAA GCTCAAGCAC AAGCCAAGCT TGCCGCCCAC
AGGCAAGTGA TGACCGATGG TCGCCAATCC CGCAAGGCGC AACGCCATCA ACTCGCAGTG
CAATGGGCTG CCAATCCGAC GGATGAGACA TTGCGTGAAA ACGCAGTAAC TGAAGCCAAT
CTCAGCCAAG AAAGTATCAA TGAAAAGAAT CAGTTAAGAG ATATTAAACA CTACTGGGAT
GAACGTATCC ATGCCATCAG CCAAGCGTTA ACTCTGCTCA CTGATAAGCG TGACGCGTTA
AGACAACAGC GTAAACAGCT CTCGGCGGCG CTGCAGCAAA AGCTGTTTGA GCAATATCGT
TTTTTGAATA TTCAAGGCGC AGAAAAGAGC CTTAACGGCA TATTTAACGG GACGGTTGAG
TTAACCCCGC CCGCAGGCTC GGGAGAATGT GCCGCACCTA AGTTGCTACA TTACGCTTTT
AAACATGGTC TTAAACCATT GGCGATTGCC GAATTTTGGT GGGGCGCACC GCCAAAATCA
GAAATTCGCC AACACAAACA GTTTTATCCC GCCTGCCTGC GTAAATGCCA ACCTATCTTG
GGGCATATGC TCGAAGGGCT TGTTGTCGAT GATAATCCAC TGCTGACGAA CCCCGCCGAA
GGCAAAACCT TAAGCATCCT CTACCAAGAC GAGGCGATGG CGATTGTGAA CAAACCCGCC
GAGTTTTTAT CCGTGCCCGG AAAAGAGATT GAAGACTCAG TGTATTCGCG CATGCAGCAA
ACCTTTCCTA ATGCCACCGG GCCGCTTATC GTCCACAGGC TCGATATGTC GACCTCGGGA
TTAATGGTGA TCGCATTGAC AAAAGACGCC CATAAACAGC TGCAAAAACA GTTTATCCAG
CGCACAGTGA CTAAGCGTTA TGTGGCACTT TTAGCAGGGA TCCCTACAGC AATGGCAGAT
AAACAGGCAG CGGGACAAAT CTCTTTACCC CTACGTGGCG ATTTAGACGA TAGACCGAGG
CAACTGGTTT GCCACGAGTT TGGCAAAGCG GCCCAAACCC ATTGGGAATT AAGCCATATC
GATGAAATGG CACGTACAGC CCGCGTGTAT CTATTTCCTA AAACAGGCCG AACCCATCAA
CTCAGAGTGC ACTGCGCCCA TTCCGAGGGG CTAAATACGC CCATTGTGGG TGACGATCTG
TACGGCACTC GCGCCAATCG GCTGCATCTC CATGCCGATT TATTGATGCT TCAACATCCC
GTCACCCGTG AACAGATGCG CTTTCAAATT GATCCCGATT TTTGA
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| Protein sequence | MHLQPFCFTS FTQAIDAYAL PQRFTFPFYY EPHPLCVIAA NELQHHLETQ NDWQHNFGLT
GELTGAIGKM FGVLLVQDPQ GEVGYLSAFS GKLAEQNHWP RFVPPVFDML AKDNFFHAEN
LQINQINEQL LAVENHPDIP RLLSELNAEQ AQAQAKLAAH RQVMTDGRQS RKAQRHQLAV
QWAANPTDET LRENAVTEAN LSQESINEKN QLRDIKHYWD ERIHAISQAL TLLTDKRDAL
RQQRKQLSAA LQQKLFEQYR FLNIQGAEKS LNGIFNGTVE LTPPAGSGEC AAPKLLHYAF
KHGLKPLAIA EFWWGAPPKS EIRQHKQFYP ACLRKCQPIL GHMLEGLVVD DNPLLTNPAE
GKTLSILYQD EAMAIVNKPA EFLSVPGKEI EDSVYSRMQQ TFPNATGPLI VHRLDMSTSG
LMVIALTKDA HKQLQKQFIQ RTVTKRYVAL LAGIPTAMAD KQAAGQISLP LRGDLDDRPR
QLVCHEFGKA AQTHWELSHI DEMARTARVY LFPKTGRTHQ LRVHCAHSEG LNTPIVGDDL
YGTRANRLHL HADLLMLQHP VTREQMRFQI DPDF
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