| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_0781 |
|---|
| Symbol | |
|---|
| ID | 5081991 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 870454 |
|---|
| End bp | 871515 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640497907 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001182310 |
|---|
| Protein GI | 146291886 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000021464 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA CATTCATCTC TGCATCAGTT GCATCAGTAT TGGCATTGGC TTCATTCGGT
GCGCTAGCCG AAGGCCCAAG CTTCTATGGT CGTTTAGATC TAGCAGTGAC TAATACTGAT
TCAAGCACTA CTCTACAAGG CAGCACTAAA GGTGCAACTA TTGGTGAGAG CGGTACTTAT
CTTGAGAATA ACTTCTCATG GTTAGGTGTA AAAGGCTCTG AAAAAGTTGC CGATGGCGTA
GATATTGTTT ACCAAATGGA GTTTGGTGTT GATAACACTA CTAATTCTGG TAATACATTC
AATGCTCGTA ACACTTTCTT AGGTTTTAAA ACGGTTGCTG GTACAGTGTT AGCGGGTCGT
AATGATACCG TATTTAAACA AGCTGAAGGT AACGTTGACG TGTTTGGTAA CACCAACGCC
GATATCGACC GTTTAGTGAG CGCTCAAGCG GGTGCTGGTC GTAGTGGTGA TGGCGTATGG
TACTATTCTC CAAAAATTGC TGATTTAGTG ACTCTGAACG CGACTTATTT ATTTGATGAT
AACTATGGCA CTTCAGAAAG CATGTATGCC GTAAGTGCGA CTTTAGGTGA TAAAGCATTT
AAAGAGCAAA ACTATTATTT AGCGGCTGCT TATAACAAAG CTATTGATGG CGTAGATGCA
TACCGTGGTG TGGCTCAGGC TAAGTTTGGT GACTTTACTG TTGGCGGTTT ATTCCAACAT
GCAGAAAGCA TCGTGAATGA TAACCGTGAT GGTAACTCAT ACTTTGTGAA CGTAGTGTAC
AAACTACAAA ACGGTGTGAA TCTGAAAGCC GAATACGGTA AAGATGAAGC TGGTTTCGGT
AGCTACTTCA AAAATGCATC AGGCCTTAAC AACAATATGA CCGTAGATTT GGATGACGTT
AATGTTGATC AAATCACTAT CGGTGCTGAT TACCGTTTAG TTAAATCAAC CTTGTTGTTT
GCACACTATG CACACTATGA AGGTGATTTC AAACAAAATG GTGTTAAACA AGATCTAATT
GAAGATGATG TTGTTTCTAT CGGTGTACGT TACGATTTCT AA
|
|---|
| Protein sequence | MKKTFISASV ASVLALASFG ALAEGPSFYG RLDLAVTNTD SSTTLQGSTK GATIGESGTY
LENNFSWLGV KGSEKVADGV DIVYQMEFGV DNTTNSGNTF NARNTFLGFK TVAGTVLAGR
NDTVFKQAEG NVDVFGNTNA DIDRLVSAQA GAGRSGDGVW YYSPKIADLV TLNATYLFDD
NYGTSESMYA VSATLGDKAF KEQNYYLAAA YNKAIDGVDA YRGVAQAKFG DFTVGGLFQH
AESIVNDNRD GNSYFVNVVY KLQNGVNLKA EYGKDEAGFG SYFKNASGLN NNMTVDLDDV
NVDQITIGAD YRLVKSTLLF AHYAHYEGDF KQNGVKQDLI EDDVVSIGVR YDF
|
|---|
| |