Gene Sputcn32_0768 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_0768 
SymboltolC 
ID5081977 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand
Start bp854186 
End bp855493 
Gene Length1308 bp 
Protein Length435 aa 
Translation table11 
GC content43% 
IMG OID640497893 
Productouter membrane channel protein 
Protein accessionYP_001182297 
Protein GI146291873 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.09945e-06 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATTTA AGATCCGTTC TTTATGCGCA GCATTAACTC TCGCAGCTTC CGCTCAAGCG 
GTACAAGCAG ATGATTTACT GCAAATTTAT CAACAAGCAC TGACTAACGA CCCTCTCGTG
TTACAAGCTC AGGCGCAACG TGATGCTTTA TTTGAAAAGA TTGAGCAAAA CCGTGCGCCT
CTGTTACCAA CACTGAGTGC AAACGTAGGG TATGACAAAG CCTGGAATGA CCCTAGGGAT
AATACCAGTG GTTTAACGGG TGGTCTTAAG TTAAATCAGG TCATTTATGA CCACAGTGCT
TGGGTAGGTT TAAGCCTTGC AGAGAAAGCC GCTTCTCAAG CTGATTCAAA CTATGCATCA
ACGCTACAAA CCTTGATTAC TCGCGTGACT AAAGCCTACT TCGATGTGTT AACGGCCAAA
GATAACTACG AGTTCCAAGG TGCAGAAAAA CGCGCTATTG AACGTCAACT TGAGCAAACA
AAACAACGCT TTGCTGTAGG TCTAACAGCA ATAACAGATG TACATGAAGC TCAAGCTCAA
TATGACCTAG CGTCTGCCAG CGAGATCCTT GCTGAAAACG ATCTTGCCAA TAGCTACGAA
GCACTGCGTG AAATCACAGG TATCGATCAC AAGACTCTTA ATGTGCTAGA TACAAATCGT
TTCTCAGCCG TGACTCCAGC CCCTTCATCA CCAAGTGAAT GGCTAAAGAT CGCTGAATCA
AACAGTGTTG ATCTAATGAC CCAACGCATT GGTAAAGATA TTGCTCAGGA AACCATCAGC
CTTTACAAAG CGGGCCATAT GCCATCCTTG AGCTTAAGTG CTGGTTATAA TAAAGGGCTT
GAGCAAAAAA CAGGCAGTGT TAACGATCCT GATTTTGATA ATGTCAATGT GGGCTTAAAT
TTAAGCATTC CCATTTTTGA AGGCTTTAAA GTGACCTCTC AAGTCAATGA AGCACAATAT
CAATATGTTG AAGCCAGTGA GAAACTTGAG CAAACCTACC GTAGTGTTGT CAAGAATGTA
CGCAATAACT ACAACAACGT AGGCGCCTCA ATTAGCTCAA TTCGTGCCTA TGAGCAATCG
GTCATTTCAT CAGAAAGCGC ATTAAAAGCG ACTCAGGCGG GCTTTGAAGT CGGTACTCGT
ACTATCGTTG ACGTACTAAA CCGTACCCGT GACTTGTATG ACTCAAAACG TAAATTGTCA
GATGCACGTT ACAGCTACAT TAATTCGATC GTTGCCCTAA AGAAAGCAGC AGGCACACTT
AACGAAGATG ATGTTATTGC CATCAATAGC GGCCTAAAAG CTGAGTAA
 
Protein sequence
MKFKIRSLCA ALTLAASAQA VQADDLLQIY QQALTNDPLV LQAQAQRDAL FEKIEQNRAP 
LLPTLSANVG YDKAWNDPRD NTSGLTGGLK LNQVIYDHSA WVGLSLAEKA ASQADSNYAS
TLQTLITRVT KAYFDVLTAK DNYEFQGAEK RAIERQLEQT KQRFAVGLTA ITDVHEAQAQ
YDLASASEIL AENDLANSYE ALREITGIDH KTLNVLDTNR FSAVTPAPSS PSEWLKIAES
NSVDLMTQRI GKDIAQETIS LYKAGHMPSL SLSAGYNKGL EQKTGSVNDP DFDNVNVGLN
LSIPIFEGFK VTSQVNEAQY QYVEASEKLE QTYRSVVKNV RNNYNNVGAS ISSIRAYEQS
VISSESALKA TQAGFEVGTR TIVDVLNRTR DLYDSKRKLS DARYSYINSI VALKKAAGTL
NEDDVIAINS GLKAE