Gene Sputcn32_0748 details

Gene Information

• Locus tag: Sputcn32_0748
• ID: 5082056
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella putrefaciens CN-32
• Kingdom: Bacteria
• Replicon accession: NC_009438
• Strand: +
• Start bp: 834836
• End bp: 835492
• Gene Length: 657 bp
• Protein Length: 218 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 640497873
• Product: Sel1 domain-containing protein
• Protein accession: YP_001182277
• Protein GI: 146291853
• COG category: [R] General function prediction only
• COG ID: [COG0790] FOG: TPR repeat, SEL1 subfamily

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.000000706188
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAAGTAT TCACCCTATT GTCATTGAGA GTCGTTATGC TTCGTACTGT ATTAGTTGCG 
CTACTGCCTT TAGTCTCTTC AATGTGCTTT GCGCAAACAC TGGCAGTCGA TATTTACAGC 
CAAGATCAAT TGCTTGAATT GATCCGTAGC AATCAGTATT TAGCGAAAGT AAAGCGTGAT 
GATTGCCAAT TGGTCCAAGA TATTGAGGCC AGGGCTGAAG TTCTGAAGCA ACCTTTATAT 
CAATTTCTTT GGGGAGAAAT GCTGAACCAT GGGACTTGTG TAAAAGCAAA TCCTACTAAG 
GGAATGCGCT TGCTACGTGA TTCGGTTGAA CAAGGTAGCC CTGAAGCAAT GGTGAAACTT 
GCCGAGTATT ATCAAAGTGG TAAATTTGTC ATTCGCAATA AAGATCGAGC AGTTAACTAT 
TTGTTACCTG CAGCCGCAAG CGGCGATTTA CCCGCTCGTA TGATGTTAGT GCGTTTATAC 
GGTGAAGGTT ACGGTAGTCC AAGGGATTAC GAAATGGCCT ATCACTGGTT ATATAACGAT 
GTATTTGTAG ATGAGGCGAC GAAGAAAAAA GCCTTATCTT TACTGCAGGT GTTAGCAGCT 
AAAATGCCCC CCAGTGCAGT GGCGCGGGCC CAGCAAGAGC AGTTGCGAAC CCGTTAA 

 

Protein sequence

MQVFTLLSLR VVMLRTVLVA LLPLVSSMCF AQTLAVDIYS QDQLLELIRS NQYLAKVKRD 
DCQLVQDIEA RAEVLKQPLY QFLWGEMLNH GTCVKANPTK GMRLLRDSVE QGSPEAMVKL 
AEYYQSGKFV IRNKDRAVNY LLPAAASGDL PARMMLVRLY GEGYGSPRDY EMAYHWLYND 
VFVDEATKKK ALSLLQVLAA KMPPSAVARA QQEQLRTR