| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_0715 |
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| Symbol | |
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| ID | 5082023 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 804514 |
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| End bp | 805989 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640497840 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_001182244 |
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| Protein GI | 146291820 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000180568 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGCGT CACTCCAGCT CAAACTGGGC CAACAGTTAA CCATGACGCC ACAGTTACAA
CAGGCGATTC GTCTGTTGCA GCTCTCGTCA TTGGAATTAC AACAAGAGAT CCAGCAAGCC
TTAGACTCTA ATCCTCTTCT TGAGCTGGAA GATGAGCAAT TTGACGCACC TACAGAACGC
AACCAGAATT TATCAGACAC CGATTTCAGC GAATCAAGCC CACTGCCCCC CGAACAAGAT
AGCTCCACTG TTGATACCGC AGAATCCTTG ACCAAAGAAT CTATGCCAGA TGAACTGCCC
ATGGATACCA CTTGGGATGA AGTATTTACC GCCTCACCCA ACTCAGGTTC GGGTGGCAGT
AGAGAAGACG ATATGCCCTT TCAGGGGGAA ACCAGCGAGG GCCTGCATGA ACATTTAGAA
TGGCAAAAAA ACCTCACCCC CTTCTCTGAA ACCGATCTTG CCATTGCCAC TGCCATTATT
GATGCTATTG ATGATCAGGG CTATCTCACC CAAAGTACTG AAGATATTCT CGAAGCGATG
GGAAATCCTG AGATTGAGTT AGATGAAGTC GAAGCTGTAC TTAAACGTAT CCAACACTTT
GATCCTGTTG GTGTTGCAGC AAGAGATCTC AGCGAATGTT TACTGATCCA GCTATCCCAT
TTTTCGCCGG ACACACCACA TCTCGAAAAT GCCCGCATGT TGATCAAAGA TCATTTAGAT
CTGATCGCTG CTCGCGATTT TAGGCTGTTA ATGCGTAAAA CCAAACTGAA GGAAGATGAA
CTTCGGGATG GTATCGCACT GATACAAACG CTGAACCCTC GCCCAGGTTT GTTGATCACA
CCGATGGATG AAGAATATGT GATCCCAGAT GTGTCGGTAT CGAAGAAAAA TGGCCGTTGG
GTGGTAGAAC TCAACCCAGA TTGCATGCCC AAAATCAATG TAAACCAGCA ATATGCCGCC
ATGGCTCGCA GCACAAAAAG CCAAGCAGAT AGCCAATTTA TTCGTGGCCA TCTGCAGGAA
GCCAAATGGT TTATCAAGAG CTTAGAAAGT CGTAACGACA CCTTACTCAA AGTGGCCAAT
TGTATCGTTC AATACCAACA AGGCTTCTTT GAGTACGGTG AAGAAGCCAT GAAACCTATG
GTACTTAACG ATATAGCCGA AGCGGTTGAA ATGCATGAGT CCACCATCTC ACGGGTCACA
ACTCAAAAAT ACATGCATAC CCCTAAGGGA CTTTTTGAAC TAAAATACTT CTTCTCAAGC
CATGTCGGGA CTGACGATGG CGGTGAGTGC TCATCCACAG CAATCAGAGC CTTTATTAAA
AAACTGGTTG CCGCGGAAAA CCAGAAAAAA CCATTAAGCG ACAGTAAGAT GGCACAACTT
CTGGCAGAAC AGGGAATAAA TGTTGCGCGC AGAACCATTG CGAAGTATCG AGAAGCAATG
CTTATTCCCC CTTCCAATCA GCGTAAAAGT TTATAG
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| Protein sequence | MKASLQLKLG QQLTMTPQLQ QAIRLLQLSS LELQQEIQQA LDSNPLLELE DEQFDAPTER
NQNLSDTDFS ESSPLPPEQD SSTVDTAESL TKESMPDELP MDTTWDEVFT ASPNSGSGGS
REDDMPFQGE TSEGLHEHLE WQKNLTPFSE TDLAIATAII DAIDDQGYLT QSTEDILEAM
GNPEIELDEV EAVLKRIQHF DPVGVAARDL SECLLIQLSH FSPDTPHLEN ARMLIKDHLD
LIAARDFRLL MRKTKLKEDE LRDGIALIQT LNPRPGLLIT PMDEEYVIPD VSVSKKNGRW
VVELNPDCMP KINVNQQYAA MARSTKSQAD SQFIRGHLQE AKWFIKSLES RNDTLLKVAN
CIVQYQQGFF EYGEEAMKPM VLNDIAEAVE MHESTISRVT TQKYMHTPKG LFELKYFFSS
HVGTDDGGEC SSTAIRAFIK KLVAAENQKK PLSDSKMAQL LAEQGINVAR RTIAKYREAM
LIPPSNQRKS L
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