Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_0639 |
Symbol | |
ID | 5080429 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 708241 |
End bp | 709608 |
Gene Length | 1368 bp |
Protein Length | 455 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640497764 |
Product | major facilitator transporter |
Protein accession | YP_001182168 |
Protein GI | 146291744 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00996628 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTAACA ACGGGCTTTC AGGTACTGAG AAAAAAGTCG CGTTTTCTTT AGCCAGTGTA TTTGGTTTAC GCATGATGGG CTTATTTATG ATCATGCCCG TCTTTGCGCT TTATGGTCAG CACCTCGAAG GTTTTTCGCC TCTGTGGGTG GGTATTGCTA TCGGCGCCTA TGGTCTGACT CAAGCCGTGC TGCAAATCCC TATGGGGATT TTATCTGACA AGTATGGTCG CAAGCCGATT ATTCTTGGTG GCTTAGTGTT GTTTGCTGTC GGTAGTGTTA TCGCAGCTAA TGCAGATACA ATTTATGGCG TTGTGTTTGG CCGAGCAGTG CAGGGGATGG GCGCGATTGC AGCCGCAGTA CTGGCGCTTG CAGCAGATTT AACCCGTGAT GAACAACGTA CTAAGGTGAT GGCGATCATC GGCATGTGCA TCGGGCTATC CTTTGCCCTG TCTTTGCTAA TGGGGCCGAT AGTCGCGCAG CATCTTGGTT TGACTGGATT ATTTTGGTTA ACGGCAGTAT TAGCGATTGT GGGTATGCTG TTGATCCAAT TTTTAGTGCC TAATCCCATC ACTCAGGCAC CCAAGGGAGA TACTTTAGCC ACTCCCGCTA AGCTCAAACG TATGTTTCTT GAGCCGCAAT TATTTAGGCT TAACGCTGGG ATTTTTATCC TGCATTTAGT GCTTACCGCT GTATTTGTGG CCTTACCGCT AGATCTGGTT GATGCGGGGC TGGTTAAAGA AAAACATTGG ATGCTGTATT TTCCCGCTTT CGTGGGCGCA TTTATTTTAA TGGTGCCGTT AATCATCATT GGGGTTAAGC GTAAGAATAC TAAAGCCATG TTCCAAATTG CGCTGGTGAT CATGATATGT TCATTGGCTG GTATGGCAAT ATTTGCCTGT AATCTATGGG CTTTGAGTGC GGCGGTATTA TTGTTTTTTA CTGGTTTTAA CTATCTCGAG GCATCATTAC CGAGCTTAAT TGCTAAATTC TGTCCCGTAG GGGAGAAAGG TTCTGCCATG GGGGTATATT CCACAAGCCA ATTCTTAGGG GCATTTTGTG GTGGTATGCT CGGTGGCGGT GCTTTTCAGC TCGTGGGCGC CGTCGGGGTC TTTATTGTTG CTGTGATCTT AATGTCTATA TGGTTATTCC TGACATTAGG CATGCAAAAT CCTGTGCTGT TAAAGAGTTA CACCTTAGAA GCCGAAGTAA AAGATAAGGC GCAAGCGCGC GATATGGCAA CCCAGTTATC GCAATTAATG GGTGTTGTTG AAGCCATAGT TGTGCTGGAC GATAAGGTGG CTTATCTCAA GGTAGACGAG CATTTCGATT TAAGAGAAGC CCGAGCTGTG TTAGGCTCTG CTCAATAA
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Protein sequence | MGNNGLSGTE KKVAFSLASV FGLRMMGLFM IMPVFALYGQ HLEGFSPLWV GIAIGAYGLT QAVLQIPMGI LSDKYGRKPI ILGGLVLFAV GSVIAANADT IYGVVFGRAV QGMGAIAAAV LALAADLTRD EQRTKVMAII GMCIGLSFAL SLLMGPIVAQ HLGLTGLFWL TAVLAIVGML LIQFLVPNPI TQAPKGDTLA TPAKLKRMFL EPQLFRLNAG IFILHLVLTA VFVALPLDLV DAGLVKEKHW MLYFPAFVGA FILMVPLIII GVKRKNTKAM FQIALVIMIC SLAGMAIFAC NLWALSAAVL LFFTGFNYLE ASLPSLIAKF CPVGEKGSAM GVYSTSQFLG AFCGGMLGGG AFQLVGAVGV FIVAVILMSI WLFLTLGMQN PVLLKSYTLE AEVKDKAQAR DMATQLSQLM GVVEAIVVLD DKVAYLKVDE HFDLREARAV LGSAQ
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