| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_0091 |
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| Symbol | |
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| ID | 5078866 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 103162 |
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| End bp | 106296 |
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| Gene Length | 3135 bp |
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| Protein Length | 1044 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640497211 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001181626 |
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| Protein GI | 146291202 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACGTT TTTTTATTGA TCGCCCCATC TTTGCGTGGG TGATCGCCTT AATTATTATG
TTGGCGGGGA TCCTATCGAT CCGTTCTCTG CCAGTATCCC AATATCCGAG CATTGCACCA
CCAACAGTGG TGATCAGCGC TAATTACCCT GGCGCTTCTG CTAAGATCGT TGAGGACTCT
GTGACTCAGG TGATTGAGCA GCGCATGACG GGTATTGACC ATCTGCGTTA TATCACTTCA
ACCAGTGATA GTTTTGGTAA TGCGTCTATT ACCTTAACCT TTAACGCAGA AGCCGATCCG
GATATTGCGC AGGTTCAGGT TCAGAACAAG TTACAAGGTG CTATGACCTT GTTACCACAG
GAAGTGCAAT CACAGGGGGT GAATGTTAAC AAGTCTAGCT CTGGTGGCTT CCTATTGCTC
TTAGGCTTTG TATCAACTGA CGGTTCTCTG GATAAGAGTG ATATCGCCGA CTATGTAGGT
TCTAACGTAC AAGATCCTAT GAGTCGTGTT CCTGGTGTGG GCGAGATTCA GTTATTCGGC
GCTCAATACG CGATGCGTAT ATGGTTAGAT CCGTTAAAAC TGACCCAATA CAACCTGACG
AGCATAGATG TCGTTTCGGC GATCCGTTCT CAAAACGCGC AAGTTTCATC GGGTCAACTC
GGTGGTACAC CATCGGTAGC GGGTCAAGAG CTAAACGCAA CCGTTTCGGC CCAAAGCCGT
TTACAAACGC CGGAGGAGTT TCGCAAGATT ATTCTTAAAT CGGATACATC TGGCGCTATT
GTGTTCTTAG GTGATGTTGC GCGCATTGAG TTAGGTTCTG AAAGCTATTC AGTCGTGTCA
TCGTATAACG GTAAACCCGC CACAGGTTTA GCGATTAAAC TGGCAACGGG CGCAAACGCA
CTCGATACCG CAGAAGCCGT TCGCGCTAAA ATCGCTGAGA TGAAACCTTT CTTCCCGCAA
GGGTTGGATG TGGTTTATCC CTACGACACA ACACCTTTCG TTGAAAAATC AATCGAAGGC
GTAGTGCACA CTCTGATAGA AGCCGTTGTA CTGGTGTTTC TCATCATGTA CCTCTTCCTG
CAAAATTTCC GTGCAACTTT AATCCCAACT ATCGCGGTGC CAGTGGTATT ACTCGGGACC
TTTGCAATTC TCTCTGCGAC GGGCTTCTCG ATCAATACAC TTACCATGTT TGCTATGGTG
CTGGCGATTG GCTTGCTGGT AGACGATGCG ATTGTGGTGG TAGAAAACGT CGAGCGGGTG
ATGTCTGAGG AGGGGTTAAG TCCACTCGAG GCTACACGTA AATCGATGGA TCAAATCACC
GGCGCCTTGG TAGGTATCGG TTTGACTCTG TCCGCGGTAT TCGTGCCAAT GGCATTTATG
TCTGGTTCAA CCGGGGTTAT TTATCGTCAG TTCTCTGTCA CTATTGTGTC AGCGATGGCA
CTGTCTGTGA TGGTTGCCTT AATTTTAACG CCAGCACTTT GTGCAACTAT GTTAAAACCA
CTCAAGAAAG GCCATGGGCA CATTGAAACA GGCTTCTTTG GTTGGTTTAA CCGTGGTTTT
GATAAATTAA CGAATCGTTA CGAATCGAGT GTCGCTAGCA TCATCAAGCG TGGCTTTAGG
GTAATGATGA TTTACGTTGC ACTGGTGGTT GCAGTGGCTT GGATCTTCAT GCGTATGCCA
ACCGCTTTCT TGCCAGATGA AGACCAAGGT ATTTTGTTTA CTCAGGCAAT TTTACCGACG
AACGCATCCC AAGAAAGTAC CATAAAAGTG TTGGATAAAG TGTCTGAACA CTTTATGGCT
GAAGACGGTG TGAGATCGGT ATTTAGCGTG GCGGGCTTTA GTTTTGCGGG TCAAGGGCAA
AACATGGGTA TCGCTTTCGT GGGGCTGAAG GATTGGTCTG AGCGTGAGTC TGGTATGGAT
GTTCAATCTA TTGCTGGGCG TGCTATGGGT GCATTCAGTC AGATGAAAGA TGCCTTCGTA
TTCGCCTTCG TACCGCCTGC GGTTATTGAG CTGGGTAAGG CTAACGGCTT TGATATGTTC
CTGCAGGATA AGAATGGTCA AGGCCATGAG AAATTAGTGG CTGCACGTAA CCAGCTATTA
GGTATGGCGG CACAGAATCC TAATCTAGTG GGCGTTCGTC CTAATGGTCA GGAAGACGCA
CCAATTTACC AATTACATAT AGATCACGCT AAATTAAGCG CGCTAGGCAT TGAAATCGGT
AATGTTAACA GTGTACTTGC AACGGCATGG GGTGGTTCAT ATGTGAACGA CTTTATCGAT
CGTGGCCGCG TTAAAAAAGT CTATGTGCAA GGTGATGCCC AGTATCGTAT GCAACCCGGT
GACTTAGACT CTTGGTATGT ACGTAACAAT AATGGTGACA TGGTGCCATT CTCTGCTTTC
GCGAGAGGGA CATGGGAATA TGGTTCACCA CGTCTAGAGC GCTTTAACGG CTTGCCCGCG
ATGAATATTC AAGGCGCAAC AGCGGCAGGA TTTAGTACTG GTGCTGCCAT GGATATTATG
GAAGATTTGG TTAAGCAGTT GCCTCCTGGC TTTGGCATTG AGTGGAACGG TTTATCCTAC
GAAGAGCGTT TGTCGGGTAA CCAAGCACCT GCGTTATATG CACTGTCAAT CTTAGTGGTA
TTCCTCGTAC TTGCTGCTCT TTATGAAAGC TGGTCGGTAC CCTTTGCCGT TGTGCTGGTG
GTGCCGTTGG GGATTATTGG TGCATTGTTA GCGATGAATG GTCGTGGTTT ACCAAACGAC
GTATTCTTCC AAGTAGGTCT ACTTACAACG GTTGGCTTAG CGACTAAGAA CGCAATCTTG
ATTGTGGAGT TTGCTAAAGA GTACTACGAA AAAGGCGCTG GTTTAGTGGA GGCGACGCTG
CATGCGGTTC GCGTTCGTCT GCGTCCTATT TTGATGACGT CCTTAGCCTT TGGTTTGGGT
GTTGTGCCAT TAGCGATCAG TACCGGTGTC GGTTCTGGTA GCCAAAACGC CATCGGTACT
GGTGTTCTTG GTGGTATGAT GAGCTCGACC TTCTTAGGTA TCTTCTTCGT GCCCTTATTC
TTCGTTATTG TTGAGCGTAT CTTCAGTAAG CGAGAGAGAA AAGCGAAAGA CGAAAAGCCG
ACATCGGCGG AGTAA
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| Protein sequence | MARFFIDRPI FAWVIALIIM LAGILSIRSL PVSQYPSIAP PTVVISANYP GASAKIVEDS
VTQVIEQRMT GIDHLRYITS TSDSFGNASI TLTFNAEADP DIAQVQVQNK LQGAMTLLPQ
EVQSQGVNVN KSSSGGFLLL LGFVSTDGSL DKSDIADYVG SNVQDPMSRV PGVGEIQLFG
AQYAMRIWLD PLKLTQYNLT SIDVVSAIRS QNAQVSSGQL GGTPSVAGQE LNATVSAQSR
LQTPEEFRKI ILKSDTSGAI VFLGDVARIE LGSESYSVVS SYNGKPATGL AIKLATGANA
LDTAEAVRAK IAEMKPFFPQ GLDVVYPYDT TPFVEKSIEG VVHTLIEAVV LVFLIMYLFL
QNFRATLIPT IAVPVVLLGT FAILSATGFS INTLTMFAMV LAIGLLVDDA IVVVENVERV
MSEEGLSPLE ATRKSMDQIT GALVGIGLTL SAVFVPMAFM SGSTGVIYRQ FSVTIVSAMA
LSVMVALILT PALCATMLKP LKKGHGHIET GFFGWFNRGF DKLTNRYESS VASIIKRGFR
VMMIYVALVV AVAWIFMRMP TAFLPDEDQG ILFTQAILPT NASQESTIKV LDKVSEHFMA
EDGVRSVFSV AGFSFAGQGQ NMGIAFVGLK DWSERESGMD VQSIAGRAMG AFSQMKDAFV
FAFVPPAVIE LGKANGFDMF LQDKNGQGHE KLVAARNQLL GMAAQNPNLV GVRPNGQEDA
PIYQLHIDHA KLSALGIEIG NVNSVLATAW GGSYVNDFID RGRVKKVYVQ GDAQYRMQPG
DLDSWYVRNN NGDMVPFSAF ARGTWEYGSP RLERFNGLPA MNIQGATAAG FSTGAAMDIM
EDLVKQLPPG FGIEWNGLSY EERLSGNQAP ALYALSILVV FLVLAALYES WSVPFAVVLV
VPLGIIGALL AMNGRGLPND VFFQVGLLTT VGLATKNAIL IVEFAKEYYE KGAGLVEATL
HAVRVRLRPI LMTSLAFGLG VVPLAISTGV GSGSQNAIGT GVLGGMMSST FLGIFFVPLF
FVIVERIFSK RERKAKDEKP TSAE
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