Gene Sputcn32_0080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_0080 
Symbol 
ID5078855 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand
Start bp88405 
End bp89946 
Gene Length1542 bp 
Protein Length513 aa 
Translation table11 
GC content52% 
IMG OID640497200 
Producthistidine ammonia-lyase 
Protein accessionYP_001181615 
Protein GI146291191 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2986] Histidine ammonia-lyase 
TIGRFAM ID[TIGR01225] histidine ammonia-lyase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATCTG TGAACCACTT AGTGTTAACG CCGGGCAGCT TGAGCCTAGC GCAATTGCGC 
GAAATCAGCC GTCATAAGTT GACACTGGAA CTCGCACCAG AGGCCATTAC TGATATCAAC
ACCAGTGCGC AAATCGTGCA GAAAGTGTTG GATGAAGGTC GCACCGTTTA CGGCATCAAC
ACGGGCTTTG GCTTGTTGGC CAATACCAAG ATAGCGCCCG AAGACTTGCA ATTGCTGCAA
CGCTCAATCG TGTTGTCGCA CGCCGCTGGC ACGGGGCAAT ATATGCAAGA TGCCACAGTG
CGCTTGATGA TGGTGTTAAA AATCAATTCA TTAAGTCGTG GTTTTTCAGG CATTCGTTTA
GAAGTGATTA ACTTCTTAAT CAATTTAGTG AACGCCGAAG TGTATCCCTG CGTGCCAGAA
AAAGGTTCAG TCGGCGCCTC GGGTGACTTA GCGCCACTGG CGCACATGTG TTTGCCTATG
CTGGGCGAAG GCGAGATGAG CTATCGAGGA GAGTTAATTT CCGCTGCCGA AGGTTTAGAA
ATCGCCGGCC TCAAGCCAAT CGATTTAGCG GCGAAAGAAG GGCTAGCTTT GCTTAACGGC
ACACAAGCCT CGACTGCGCT GGCGCTGGAA GGGTTATTCC ATGCCGAAGA CTTGTTTGCA
GCAAGTTCAG TGATCGGTGC CATGAGTGTC GAAGCCGCTA TGGGCAGCCG TAGCCCGTTT
GATCCTCGCA TCCATGCGGC GCGTGGTCAG AAAGGTCAAA TCGATTCGGC CATGGTCTTC
CGTCATCTAC TGGGTGAAGA GTCTGAGATA AGCTTAAGTC ATGTTAACTG TGAAAAGGTG
CAAGATCCTT ACTCACTGCG CTGTCAGCCA CAGGTGTTGG GTGCTTGTTT GACCCAAATT
CGTCACGCGG CCGAGGTGTT AGGCACAGAG GCCAATGGCG TAACCGATAA TCCACTGGTG
TTCCAAGACT CGGGCGATAT CATTTCGGGC GGTAACTTCC ACGCCGAACC CGTGGCGATG
GCGGCGGATA ATTTGGCGAT TGCAATTGCC GAAATGGGCT CTATCGCCGA GCGTCGTATC
GCGCTATTGA TCGATTCTAG CCTGTCAAAA TTGCCCCCTT TCCTGGTGAA AAACGGTGGC
GTTAACTCGG GCTTTATGAT TGCCCAAGTG ACAGCGGCAG CTTTGGCGTC TGAGAACAAA
ACCTACGCTC ATCCGGCATC GGTAGACAGC TTGCCAACAT CGGCTAACCA AGAAGACCAT
GTTTCTATGG CGACCTTTGC GGCCCGCCGC TTGCGCGATA TGAGCGAAAA TACCCGTGGT
GTACTGGCAA TTGAATTGTT AGCAGCGGCT CAGGGTTTAG ATTTCCGCGC TCCTTTAGCC
CCAAGTGCTG CCGTGGCTAA GGCTAAAGCC GAATTACGTG AAGTTGTCGC TTATTACGAT
AAAGACAGAT ACTTCGCGCC AGATATCGAA GCCGCAACGG ACTTGTTATA TACCGCCAGC
TTTAATGGCT ATTTACCGGC TGGCACCTTA CCGAGTTTAT AG
 
Protein sequence
MKSVNHLVLT PGSLSLAQLR EISRHKLTLE LAPEAITDIN TSAQIVQKVL DEGRTVYGIN 
TGFGLLANTK IAPEDLQLLQ RSIVLSHAAG TGQYMQDATV RLMMVLKINS LSRGFSGIRL
EVINFLINLV NAEVYPCVPE KGSVGASGDL APLAHMCLPM LGEGEMSYRG ELISAAEGLE
IAGLKPIDLA AKEGLALLNG TQASTALALE GLFHAEDLFA ASSVIGAMSV EAAMGSRSPF
DPRIHAARGQ KGQIDSAMVF RHLLGEESEI SLSHVNCEKV QDPYSLRCQP QVLGACLTQI
RHAAEVLGTE ANGVTDNPLV FQDSGDIISG GNFHAEPVAM AADNLAIAIA EMGSIAERRI
ALLIDSSLSK LPPFLVKNGG VNSGFMIAQV TAAALASENK TYAHPASVDS LPTSANQEDH
VSMATFAARR LRDMSENTRG VLAIELLAAA QGLDFRAPLA PSAAVAKAKA ELREVVAYYD
KDRYFAPDIE AATDLLYTAS FNGYLPAGTL PSL