Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_0080 |
Symbol | |
ID | 5078855 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 88405 |
End bp | 89946 |
Gene Length | 1542 bp |
Protein Length | 513 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640497200 |
Product | histidine ammonia-lyase |
Protein accession | YP_001181615 |
Protein GI | 146291191 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2986] Histidine ammonia-lyase |
TIGRFAM ID | [TIGR01225] histidine ammonia-lyase |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATCTG TGAACCACTT AGTGTTAACG CCGGGCAGCT TGAGCCTAGC GCAATTGCGC GAAATCAGCC GTCATAAGTT GACACTGGAA CTCGCACCAG AGGCCATTAC TGATATCAAC ACCAGTGCGC AAATCGTGCA GAAAGTGTTG GATGAAGGTC GCACCGTTTA CGGCATCAAC ACGGGCTTTG GCTTGTTGGC CAATACCAAG ATAGCGCCCG AAGACTTGCA ATTGCTGCAA CGCTCAATCG TGTTGTCGCA CGCCGCTGGC ACGGGGCAAT ATATGCAAGA TGCCACAGTG CGCTTGATGA TGGTGTTAAA AATCAATTCA TTAAGTCGTG GTTTTTCAGG CATTCGTTTA GAAGTGATTA ACTTCTTAAT CAATTTAGTG AACGCCGAAG TGTATCCCTG CGTGCCAGAA AAAGGTTCAG TCGGCGCCTC GGGTGACTTA GCGCCACTGG CGCACATGTG TTTGCCTATG CTGGGCGAAG GCGAGATGAG CTATCGAGGA GAGTTAATTT CCGCTGCCGA AGGTTTAGAA ATCGCCGGCC TCAAGCCAAT CGATTTAGCG GCGAAAGAAG GGCTAGCTTT GCTTAACGGC ACACAAGCCT CGACTGCGCT GGCGCTGGAA GGGTTATTCC ATGCCGAAGA CTTGTTTGCA GCAAGTTCAG TGATCGGTGC CATGAGTGTC GAAGCCGCTA TGGGCAGCCG TAGCCCGTTT GATCCTCGCA TCCATGCGGC GCGTGGTCAG AAAGGTCAAA TCGATTCGGC CATGGTCTTC CGTCATCTAC TGGGTGAAGA GTCTGAGATA AGCTTAAGTC ATGTTAACTG TGAAAAGGTG CAAGATCCTT ACTCACTGCG CTGTCAGCCA CAGGTGTTGG GTGCTTGTTT GACCCAAATT CGTCACGCGG CCGAGGTGTT AGGCACAGAG GCCAATGGCG TAACCGATAA TCCACTGGTG TTCCAAGACT CGGGCGATAT CATTTCGGGC GGTAACTTCC ACGCCGAACC CGTGGCGATG GCGGCGGATA ATTTGGCGAT TGCAATTGCC GAAATGGGCT CTATCGCCGA GCGTCGTATC GCGCTATTGA TCGATTCTAG CCTGTCAAAA TTGCCCCCTT TCCTGGTGAA AAACGGTGGC GTTAACTCGG GCTTTATGAT TGCCCAAGTG ACAGCGGCAG CTTTGGCGTC TGAGAACAAA ACCTACGCTC ATCCGGCATC GGTAGACAGC TTGCCAACAT CGGCTAACCA AGAAGACCAT GTTTCTATGG CGACCTTTGC GGCCCGCCGC TTGCGCGATA TGAGCGAAAA TACCCGTGGT GTACTGGCAA TTGAATTGTT AGCAGCGGCT CAGGGTTTAG ATTTCCGCGC TCCTTTAGCC CCAAGTGCTG CCGTGGCTAA GGCTAAAGCC GAATTACGTG AAGTTGTCGC TTATTACGAT AAAGACAGAT ACTTCGCGCC AGATATCGAA GCCGCAACGG ACTTGTTATA TACCGCCAGC TTTAATGGCT ATTTACCGGC TGGCACCTTA CCGAGTTTAT AG
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Protein sequence | MKSVNHLVLT PGSLSLAQLR EISRHKLTLE LAPEAITDIN TSAQIVQKVL DEGRTVYGIN TGFGLLANTK IAPEDLQLLQ RSIVLSHAAG TGQYMQDATV RLMMVLKINS LSRGFSGIRL EVINFLINLV NAEVYPCVPE KGSVGASGDL APLAHMCLPM LGEGEMSYRG ELISAAEGLE IAGLKPIDLA AKEGLALLNG TQASTALALE GLFHAEDLFA ASSVIGAMSV EAAMGSRSPF DPRIHAARGQ KGQIDSAMVF RHLLGEESEI SLSHVNCEKV QDPYSLRCQP QVLGACLTQI RHAAEVLGTE ANGVTDNPLV FQDSGDIISG GNFHAEPVAM AADNLAIAIA EMGSIAERRI ALLIDSSLSK LPPFLVKNGG VNSGFMIAQV TAAALASENK TYAHPASVDS LPTSANQEDH VSMATFAARR LRDMSENTRG VLAIELLAAA QGLDFRAPLA PSAAVAKAKA ELREVVAYYD KDRYFAPDIE AATDLLYTAS FNGYLPAGTL PSL
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