| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_0025 |
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| Symbol | |
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| ID | 5081500 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 30700 |
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| End bp | 31824 |
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| Gene Length | 1125 bp |
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| Protein Length | 374 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640497141 |
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| Product | peptidoglycan-binding LysM |
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| Protein accession | YP_001181560 |
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| Protein GI | 146291136 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACCACA CCATGAAACG GTTAATTTTA CTCGTGTTAA TGACATTTAG TTGCACGTTT
GTTTCCGCTG ATACTCTTAC GCTTAAAGCG GGGTATCCCG AGTCATATGT GGTGAAAAAA
GGTGATACCT TATGGGATAT CGCTACGACT TTCTTAAATG ATCCGTGGAA ATGGCCTCGT
CTTTGGGATG TTAACCCACA GATTGCGAAC CCTCATCTTA TTTATCCCGG TGATCAACTG
ACATTAATCT TTATTGATGG TCAACCTCGG CTTGTACGTG ATAGTTCGAG TGCGGGAAAA
CCTTTTGTAA AAAAGAGCCC TGAAGGGCGC ATTATTGCTA AGAGTGATGC TGTTCCTGCC
ATCGATCTTG CACTTATCAA AAACTATCTT GTGCAAAATC GAGTTGTCGA TTCTAACTGG
TTTTCTGAGC AGCCAATGAT ATTGGCGGGT GAAAGTCCTT CACGTCACCA TATTATTGGT
GACGTGGTTT ATATCAATAA CATATTACCT TTACACCAAA AGTATGGTGT TTACGAAAGT
GGTCGAGCAT TTTTTAATAA AGAGTCCGGT GAGGCGTTGG GGCAAGAGGC TATCTTGGTA
TCTACTGGTC AAGTTATTGA GTCTGGAAAT GTTTCAAAGA TAAAATTACT GAGTAGTTTT
CGAGAGACTA AAGCGGGTTT TAAGGTGCTA CCAATGGAGG ATGACTCCCT GATGTCTGCG
TACTTTACCC CCAAGCCTGC ACAGTTAGTA AACCATGCTT CAGTTTTAGC AACAGAATCT
GCAATGCGTG AAGCGGGTAA GCTGAATGTA GTCTATTTAG ATAAAGGAAC CCAAGACGGT
GTTGAGCCTG GTAATGTGTT CTCAATTTAC CGTGATGGTG AAGAAATTGT CATTAACCAT
GATGGTTCAC CGGTTCCTGC GCTAGAACGC ACCGCCTATG ATAACATCAT AGCGTCCGTT
TCATCGGAGC GTTCGATTAA AATGCCGGAC GTTTATCATG GTAAACTAAT GGTATTTAAA
GTATTCGATA AAGTGAGTCT GGGTTTAATT GTCTCTACAG AACGCCCAGT TCGAGTTGAT
GATAAGCTAA TTTCGCCCGA TTATTTAGCG TTTAGAGGTC AATAA
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| Protein sequence | MDHTMKRLIL LVLMTFSCTF VSADTLTLKA GYPESYVVKK GDTLWDIATT FLNDPWKWPR
LWDVNPQIAN PHLIYPGDQL TLIFIDGQPR LVRDSSSAGK PFVKKSPEGR IIAKSDAVPA
IDLALIKNYL VQNRVVDSNW FSEQPMILAG ESPSRHHIIG DVVYINNILP LHQKYGVYES
GRAFFNKESG EALGQEAILV STGQVIESGN VSKIKLLSSF RETKAGFKVL PMEDDSLMSA
YFTPKPAQLV NHASVLATES AMREAGKLNV VYLDKGTQDG VEPGNVFSIY RDGEEIVINH
DGSPVPALER TAYDNIIASV SSERSIKMPD VYHGKLMVFK VFDKVSLGLI VSTERPVRVD
DKLISPDYLA FRGQ
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