| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ent638_3074 |
|---|
| Symbol | rluD |
|---|
| ID | 5112613 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Enterobacter sp. 638 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009436 |
|---|
| Strand | - |
|---|
| Start bp | 3351681 |
|---|
| End bp | 3352661 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640493272 |
|---|
| Product | 23S rRNA pseudouridine synthase D |
|---|
| Protein accession | YP_001177789 |
|---|
| Protein GI | 146312715 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.273549 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0295932 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACAAC GAGTAGAACT CACCGCAACA GTCTCCGAAA ATCAGCTCGG TCAACGCTTA
GATCAAGCTT TGGCCGAAAT GTTCCCTGAT TATTCGCGTT CACGCATAAA AGAATGGATT
CTTGACCAAC GAGTGATGGT CAACGGCAAA GTTTGGGACA CGCCAAAAGA GAAAGTGTTA
GGTGGGGAAG TGGTCGCCAT CAATGCTGAA ATCGATGAAG AAGTCCGTTT TGAAGCACAA
GATATCCCGC TTACCATCGT CTATGAAGAT GATGACATTC TGGTGATCAA CAAGCCTCGC
GGCCTGGTTG TCCACCCGGG AGCGGGTAAT CCTGATGGTA CAGTGCTGAA TGCGCTGCTC
CACTACTATC CACCGATCAC CGATGTACCG CGTGCAGGCA TCGTGCATCG TCTGGATAAA
GACACAACCG GTTTGATGGT CGTCGCAAAA ACTGTTCCGG CGCAAACGCG CTTGGTGGAA
TCGTTGCAGC TGCGTGAAAT CACCCGTGAA TATGAAGCGG TCGCGATTGG TCACATGACC
TCAGGCGGTA CGGTAGAAGA GCCGATCAGC CGTCACCCGA CCAAACGCAC GCACATGTCA
GTGCATCCGA TGGGGAAACC CGCGGTAACG CATTACCGCA TTATGGAACA TTTCCGCATT
CATACGCGTT TGCGTTTGCG TCTGGAAACG GGCCGTACTC ACCAGATCCG TGTGCACATG
TCGCACATTA CGCATCCGCT GGTAGGTGAT CAGGTTTATG GCGGACGCCC GCGTCCACCT
AAAGGTGCTT CTGAAGAATT TATCAGTACC CTGCGTAAAT TTGATCGTCA GGCTTTGCAC
GCCACTATGC TGCGCCTCTA TCACCCTATT ACAGGCATCG AGATGGAATG GCATGCGCCT
ATTCCTCAGG ACATGGTCGA GCTCATCGAA GCGATGCGTG CAGATTTTGA AGAGCATAAG
GATAAAGTGG ACTGGTTATG A
|
|---|
| Protein sequence | MAQRVELTAT VSENQLGQRL DQALAEMFPD YSRSRIKEWI LDQRVMVNGK VWDTPKEKVL
GGEVVAINAE IDEEVRFEAQ DIPLTIVYED DDILVINKPR GLVVHPGAGN PDGTVLNALL
HYYPPITDVP RAGIVHRLDK DTTGLMVVAK TVPAQTRLVE SLQLREITRE YEAVAIGHMT
SGGTVEEPIS RHPTKRTHMS VHPMGKPAVT HYRIMEHFRI HTRLRLRLET GRTHQIRVHM
SHITHPLVGD QVYGGRPRPP KGASEEFIST LRKFDRQALH ATMLRLYHPI TGIEMEWHAP
IPQDMVELIE AMRADFEEHK DKVDWL
|
|---|
| |