Gene Rsph17025_3976 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRsph17025_3976 
Symbol 
ID5086151 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodobacter sphaeroides ATCC 17025 
KingdomBacteria 
Replicon accessionNC_009430 
Strand
Start bp3238 
End bp3975 
Gene Length738 bp 
Protein Length245 aa 
Translation table11 
GC content73% 
IMG OID640485535 
Productshort chain dehydrogenase 
Protein accessionYP_001170135 
Protein GI146279978 
COG category[R] General function prediction only 
COG ID[COG0300] Short-chain dehydrogenases of various substrate specificities 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.00930617 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACGAAAG ACCCGGTTCT CATCCTCGGC GCGGGCTCGG ACATCGCCCG GGCCATCGCC 
CGCCGCCTGG CCGCCGACGG CCATCCGCTG CAGCTGGCGG CGCGGGACAC GGCCCGGCTG
GAGGCGGACC GCCGCGATCT CGAGCTGCGC CACGCCGTGG CGGTGACGCT GCACGAGTTC
GACGCCTGCG ATATCGCCGC CATCCCCGCC TTCCTCGATG GCTTGCCCGC CCTTCCGGGC
ATCGCCGTCT CGGCCGTGGG CCTTCTGGGC GCGCAGGCGG CCTCGGAACG CGATCCGGCG
GCGGCGCTGG CGGTCCTGCG GACGAATTTC GAGGGCCCCG CCATGGTATT CGCCGAACTG
GCCAACCGGA TGGAGGCGCG GGGGCGGGGC ACGCTGGTGG GCATCTCCTC GGTCGCCGGC
GACCGGGGAC GCGCCACGAA CTACATCTAC GGCGCGGCCA AGGCGGGCTA CACCGCCTTC
CTGTCCGGCC TGCGCAACCG GCTGGCCCGC AAGGGCGTGC AGGTGATCAC CGTCCTTCCA
GGCTTCGTGG CGACCCGGAT GACCGAGGGC ATGAACCTGC CCGCCCGGCT GACCGCGCAG
CCCGAGGAGG TCGCCGATGC CGTCGCCCGC GCGATCGCGC GCCGCCGGGA CGTGATCTAT
GTCCGCCCGG TCTGGCGCCT CATCATGGCC ATCATCCGCG CCCTGCCCGA GGCGCTGTTC
AAGAGGCTGA AACTGTGA
 
Protein sequence
MTKDPVLILG AGSDIARAIA RRLAADGHPL QLAARDTARL EADRRDLELR HAVAVTLHEF 
DACDIAAIPA FLDGLPALPG IAVSAVGLLG AQAASERDPA AALAVLRTNF EGPAMVFAEL
ANRMEARGRG TLVGISSVAG DRGRATNYIY GAAKAGYTAF LSGLRNRLAR KGVQVITVLP
GFVATRMTEG MNLPARLTAQ PEEVADAVAR AIARRRDVIY VRPVWRLIMA IIRALPEALF
KRLKL