| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_3330 |
|---|
| Symbol | |
|---|
| ID | 5085821 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009429 |
|---|
| Strand | - |
|---|
| Start bp | 205465 |
|---|
| End bp | 207609 |
|---|
| Gene Length | 2145 bp |
|---|
| Protein Length | 714 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640484899 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001169516 |
|---|
| Protein GI | 146279358 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
|---|
| TIGRFAM ID | [TIGR01586] cysteine protease domain, YopT-type
[TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.641382 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.572781 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCTC GACCCGAGGC CACAGCGCGC CCCCGTTCCC TCCCTCGTTG CCTGAAGGCC
CTTCTCCTGG GATGCTCGGC TCTGGTGACA CTGCCGGGCG CAGCACTCGC GCAGGACGCC
TCACCGCAGG ACGCCGACAC CTACCGCCTC TCGCCCATCA TCGTCGATGC CGGCGCCGCG
GCCGATGATG ACGCCAATTC CATCGTCGCG CAGGAGCTGT GGGTGGGCGG CAAGGTCGCC
ACAAGCCTCC TCGACACGCC CGCCTCGGTC TCGGTCGTCA CGCAGAAGGA GATCCGGCAG
CGCAACGCGA CGACGACCGA GGAAGTGCTG CAATATTCCG CGGGCATCGT CTCGGACTAT
TACGGCAGCG ACGACCGCAA CGACTACTTC CTCGTCCGCG GCTTTCAGGC CTCGACCTAC
CGCGACGGCC TGACCCTCGG CTCGATGCGC GGCGTGCGGG AAGAGCCCTA TGCCTACGAG
CGGGTGGAGG TGCTGAAAGG TGCCAACTCC ACCCTCTTCG GCGTGTCCGA CCCCGGAGGA
TCGGTGAACT TCGTGACCAA GGCGCCGCAG TTCGCCCGCT TCGGCGAGAT CTACGGCCAG
ATCGGCACCC AGGACCACAA GGAGATCGGC GTCGATTTCG GTGACGTGCT GAACCCCGAT
GCCACGCTCG CCTACCGCTT CACCGCCAAG GTCAGGGACA GCGCGCTCGA TTACGACACG
TCGCGCGACG ATGAAACCTT CCTGATGGGC GGGCTGAGCT GGGCGCCGAG CGACGCCACC
ACCCTCTCGC TCATCTTCGA CCATCTGGAC CGCGATGGCA CGCCCAACAG CGGCGGCTAC
CCGCTGGACC GCGAGTACGA CCGGAGCAAC TTCTTCGGCG AAGCCGACTT CAACGACCAT
GATGTCGAAC GCGACACGCT GACCGCGATG CTCCGGCACG AGTTCGGCGG CGGGCTGAGC
CTGAGCGCGA ACCTGCGCTA CAGCGACCTC ACCGACGACT TCGGCTACAT CTATCTGTCG
GATTTCGCGG ACCGAACCGG CACGGAACTG TCGCGCTTCT ACTTCGGAAC CGACAGCACC
TCCGAAGAGC TGATCGGCAA CGCCATCCTG CAATATGACA CGCGCTTCGG CTCGACCGAC
AGCAGCACGC TGCTCGGGAT CGAATATCGC GACGCCTCGA CCAGCCAGAG CTCCTACTAC
GGGGCGGCGG GCACCATCGA CCTTGCCACC GGCATCGCGA CCGGCGTGCC GTCGGCCCTT
GCGCCCTACG AGGAGCGCGA GAGCGACTAC AAGACGAAGT CGGTGTTCCT GCAGCAGAAC
CTGTCCTTCG CGGACCGGAT CGTCGCGACG GTGGGTCTGC GCCACGACTG GCTGGATCTG
GCCACCCGCG GCCAGAGCTT CGGCGTGGCC TTCGACGATG CCGACGACTA CTCCGAAACC
TCGATCCGCG GCGCGCTGAC CTACAAGATC ACCGACGAGA TCTCGACCTA TGTCAGCTAT
GTCGAGTCGG TGGCCCCGCC CGCGATCGGG GTCGAGCCCG AGCGCGGCGA ACAGTATGAG
CTGGGCGTAA AATACCAGCC CACGGGCATG AACGCCCTTC TGTCGGCGGC CATCTTCGAT
CTGACCAAGA ACGACATCAC CATCCCCGTG GTTCTGGACG ACGGCACGAT CGAGCGGCAA
CTGATCGGCG AGACCCGCGT GCGCGGGGTC GAGATCGAGG GCAAGGCCGA GATCGCCGAG
AACTGGGACG TGATCGCCGC CTATTCCTAC CTCGACGCCG AGGCCACGCG GGCCGTCGTG
CGCGGCACCG ACGTTTCGGG CAACCGATTT GCCAACGTGC CCGAGCACAT GGCCTCGCTC
TGGGTGAACC GCACGCTGCC GGCGACGGAC GCGCGCGGCG AGATGACCTT CGGGGTCGGA
GCGCGTTATG TCGGATCGTA TCACTACGCG CTGCAGAACA ATACGGGGAA GAGCGAGTCG
ACAACCCTCT TCGACGCGGC CTTCAGCTAC GAGATCGCCG AGAACACCGG CATGGTCATC
AATGTGAGCA ACCTGTTCGA CAATCAACAT GTCGTGGGGC GCGGAACGGC CGACTACTAC
AACCCCGGCC GGTCGATCAC CGCGACGCTC CGCCGGACCT GGTGA
|
|---|
| Protein sequence | MTPRPEATAR PRSLPRCLKA LLLGCSALVT LPGAALAQDA SPQDADTYRL SPIIVDAGAA
ADDDANSIVA QELWVGGKVA TSLLDTPASV SVVTQKEIRQ RNATTTEEVL QYSAGIVSDY
YGSDDRNDYF LVRGFQASTY RDGLTLGSMR GVREEPYAYE RVEVLKGANS TLFGVSDPGG
SVNFVTKAPQ FARFGEIYGQ IGTQDHKEIG VDFGDVLNPD ATLAYRFTAK VRDSALDYDT
SRDDETFLMG GLSWAPSDAT TLSLIFDHLD RDGTPNSGGY PLDREYDRSN FFGEADFNDH
DVERDTLTAM LRHEFGGGLS LSANLRYSDL TDDFGYIYLS DFADRTGTEL SRFYFGTDST
SEELIGNAIL QYDTRFGSTD SSTLLGIEYR DASTSQSSYY GAAGTIDLAT GIATGVPSAL
APYEERESDY KTKSVFLQQN LSFADRIVAT VGLRHDWLDL ATRGQSFGVA FDDADDYSET
SIRGALTYKI TDEISTYVSY VESVAPPAIG VEPERGEQYE LGVKYQPTGM NALLSAAIFD
LTKNDITIPV VLDDGTIERQ LIGETRVRGV EIEGKAEIAE NWDVIAAYSY LDAEATRAVV
RGTDVSGNRF ANVPEHMASL WVNRTLPATD ARGEMTFGVG ARYVGSYHYA LQNNTGKSES
TTLFDAAFSY EIAENTGMVI NVSNLFDNQH VVGRGTADYY NPGRSITATL RRTW
|
|---|
| |