| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_2978 |
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| Symbol | |
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| ID | 5085181 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides ATCC 17025 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009428 |
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| Strand | - |
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| Start bp | 3042784 |
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| End bp | 3044430 |
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| Gene Length | 1647 bp |
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| Protein Length | 548 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640484549 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_001169169 |
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| Protein GI | 146279010 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | [TIGR02456] trehalose synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.533119 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0820165 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATCA GCCGCACGAG TGATGTCTGG TGGAAGAACG CGGTCTTCTA CTGCCTTGAT
GTCGAGACAT TCCAGGACAG CAACGGTGAC GGAGTCGGCG ACTTTGCCGG CTTGACCCGG
CGGCTCGACC ATCTGGACCG CCTTGGCGTG AGCTGTATCT GGCTGATGCC CTTCTACCCG
AGCCCCAACC ACGACGACGG CTACGATGTG ACCGACTATT ACGCCGTCGA TCCGCGGCTC
GGCACGATGG GCGATCTCGT GGAGTTTCTT CGGAGCGCAC GGGATCGCGG GATGCGAGTC
ATCGCCGACC TTGTCGTGAA CCACACCTCG CGCGAGCATC CCTGGTTTCA GGCGGCGCGC
TCGGATCCGG CCTCGCCCTA CCACGACTGG TATGTCTGGC GCGACGAGAA GCCCGAGGAG
GACGCCTCGT CTCTGATCTT CCCGGGCGAG GAAGACAGCA GCTGGAGCTG GGACCCGAAG
GCCAGGAAAT ACTACCTGCA CCGCTTCTAC AGCCACCAGC CCGACCTCAA TGTCGAGAAC
CCCGCGGTGC GGGACGAGAT CCGCCGCATC GTCGGCTTCT GGCTTCAGCT CGGCCTGTCG
GGCTTTCGGG TCGATGCCGT GCCCTTCCTG CTCGAGCAGA TGTCCACCGA GGACAAGGGC
TTTGCGCCCC ACCGCTGGCT GCGCGACCTG CGCGCCTTCA TCAACCGGCG CTCGGGCGAG
GCGGTGCTGC TGGGCGAGGT CAACCTCGAC TACCCCGACG TGCGGCGCTT CTTCGGCGAC
GAGGACGGCG ATGAACTGCA CATGTGCCTC GACTTCAACC TCAATCAGGC CATGGCGCTG
GCGCTGGCGC GCGAAGATGC GGGGCCGATC GTGCACGGGC TGCGCCACAT GCCCGAGCTG
GCGCCGGATG ACGGCTGGGC GCATTTCCTG CGCAACCATG ACGAATGGTC GCTCGACAAG
CTGACCGAGG CCGAGCGTCA GGAGGTCTTT GCCAGCTTCG GGCCGGATCC CGACATGCAG
CTCTTCGGGC GCGGGCTGCG CCGGCGGATG CCGACGATGC TCAAGGGTAA CGAGGCGCGG
ATGCGGATGG CCTATGCGCT GATGACCTCG ATGCCGGGGG CGCCGGTGCT CTTCTACGGG
GAAGAGATCG GCATGGCCGA GAACCTCGAC ATCCCCGGCC GTCTCGCGGT GCGGGCGCCG
ATGCAGTGGG AGAGCGGGCA CAACGGCGGC TTCTCGCCCG CGCCGGCCGA CAGGCTGTTG
CGCCCGGTGG TGTCCGAGGG CCGCTGGTCC CCTGCCCGCG TCAACGTCGC CGAGCAGCAG
GACCGGCCGG ATTCGTTCTT CAAGTTCATG GAGCAGCTCA TGCGGCGGCG GCGGGAATGT
CCCGAGATCG CCTTCGGCAC CCATGCCGTC CTGCCGATGG CCCAGGCCCC CGTCTTCGCC
ATCCGCCATG ACTGGCAGGA TCGGACACTG ATCGCGCTCG CGAACCTCGG CAGCCAGGAG
CAGACCGTGA CCTGTTCCCT CTCCGACATC GACTCGATCG GCACGCTCCG CCCGATCCTC
GGCAGCGGCA AGATCTCGGT GAAGAAGACC GAACTGACGG TCGAACTCGA GGGCTACGGC
CTCCGCTGGG TCCGGTTCGA GGTCTGA
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| Protein sequence | MDISRTSDVW WKNAVFYCLD VETFQDSNGD GVGDFAGLTR RLDHLDRLGV SCIWLMPFYP
SPNHDDGYDV TDYYAVDPRL GTMGDLVEFL RSARDRGMRV IADLVVNHTS REHPWFQAAR
SDPASPYHDW YVWRDEKPEE DASSLIFPGE EDSSWSWDPK ARKYYLHRFY SHQPDLNVEN
PAVRDEIRRI VGFWLQLGLS GFRVDAVPFL LEQMSTEDKG FAPHRWLRDL RAFINRRSGE
AVLLGEVNLD YPDVRRFFGD EDGDELHMCL DFNLNQAMAL ALAREDAGPI VHGLRHMPEL
APDDGWAHFL RNHDEWSLDK LTEAERQEVF ASFGPDPDMQ LFGRGLRRRM PTMLKGNEAR
MRMAYALMTS MPGAPVLFYG EEIGMAENLD IPGRLAVRAP MQWESGHNGG FSPAPADRLL
RPVVSEGRWS PARVNVAEQQ DRPDSFFKFM EQLMRRRREC PEIAFGTHAV LPMAQAPVFA
IRHDWQDRTL IALANLGSQE QTVTCSLSDI DSIGTLRPIL GSGKISVKKT ELTVELEGYG
LRWVRFEV
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