| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_2927 |
|---|
| Symbol | |
|---|
| ID | 5084527 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | + |
|---|
| Start bp | 2984100 |
|---|
| End bp | 2985797 |
|---|
| Gene Length | 1698 bp |
|---|
| Protein Length | 565 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 640484498 |
|---|
| Product | heparinase II/III family protein |
|---|
| Protein accession | YP_001169118 |
|---|
| Protein GI | 146278959 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5360] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.298148 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0379947 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGAGG GCAGGGTCGC GCTTCTCGAT CGGCTCGCGG TCTGGCGCGC GCGGCTCAGC
CGCCCGGCGC GCCGCTTCAC GCTTCTGCCA GAGCCGGGCT GTCTCGGCCT GCCCGAGCGC
GGGCGCTGGC TGGTCGCGGG CACCCACCTC GTCGAGGGGC GGCTGGTGCA GGCGCCCGGC
ACGGCCCCGT GGGACCTTCC GGGGGCGGGC GCCGCCCAGC TTGCCGACGC CCATGGCTTC
GGCTGGCTCG ACGATCTCGC CGGGCTGGGA GACCGCCCCG CGCGGGGCCT TGCGCGCGAC
TGGACCTTCC GCTGGATTGC CCGCTTTGGC CGCGGTCGGG GCCCCGGCTG GACCCCCGCG
CTCGCGGCGC ACCGGCTCGG GCGCTGGATG AGTCATGCGG CGCTGCTGGC CGAGGCCGGC
GAGCGCGATC AGGCGACGCT GGCCCGCGCG GCCTCGCAGA CGCTCCGCTT CCTCGAGCGG
CGCTGGACCA GCGTCTGCGG CCCCGCCCGG ATCGAGGCGC TGTCGGCGAT CCTGCGCGCG
GGCCTCGTGC TCGAGGGGAT GGAGCGCCAT GTGACCGCCG CCGCCGTGGC GCTGGGGCGA
GAGGCCGAGG CGCAGGTCGA TGCCCACGGC GCCGTCGCCT CGCGCAGCCC CGAGGAACTG
GCCGAGCTGT TCGCCATCCT GGCCGAGGCC GAGGCGGCCC TTGTGGCAGC GGGCCGTCCG
GTGGCCGAGG CCCACCGCGC GGCCATCCAC CGGATAGTGC CCGTCCTGCG CGCCCTCAGG
CATTCCGACG GCGGGCTCGC CCGGTTCCAC GGCGGCGGCC GCACCGTGGC CGAGAGGGTG
GAGCGCGCCC TCGCCACCGC GGCGGTGCCC GCCGTTCCCG CCGAGGGTGC GGCCATGGGC
TTCCTGCGCC TCTCGGCCGG GCGGACGAGC GTGCTGGTCG ATGCGGCGGA CCCTCCGGCC
GGTCCCCACG CCCATGCCTC GACGCTGGCC TTCGAGATGA GTTCGGGCCG GCGGCCGGTC
GTCGTCTCCT GCGGTTCGGG CCGGGCATGG GGCACGGAAT GGCACCGGGC GGGACGCGCG
ACTCCCTCGC ATTCGACGCT GGCGATCGAA GGCTTTTCCT CGTCCCGTCT CGGCCGGTCG
GGCGAGGAGA TGACCGAGCG GGCCCGCGTC CTTTCCGCGC ACCGCCAGCG CGGCGCGGCG
GGGACGCAGC TCAGCCTGGT CCATGCCGGA TGGGCCGAGA CGCACGGCCT GACCCACCGG
CGCGAGCTGC TGCTGGCGCC CGACGGGCGC AGCCTCTCGG GCTCGGAGAC GCTCGCCGCC
CTGACGCCAG CCGAGAAGAA GCGGCTCGAC GCCGTCCTCA AGTCGGCGCG CGGGCAGGGC
ATTTGCCTCG CCCTGCGGTT TCACCTGCAT GCGGACGTGC GGGCGAGCCT CGAGCCCGCC
GGGCTCGGCG TGGGGCTGAC GCTCGCCAGC GGCGAGCGAT GGACCTTCCG GTTCGAGGGC
GCGGCGCGGC TGACGCTCGA TCCTTCGGTC TATCTCGACC GTGCCCACAT GCTCCCCCGC
GCCACGAAGC AGATCGTCCT CCACGCCGTT CTTGTGGGGC ACGAGGCCCG GATCGGCTGG
ACCTTGGCCA AGACAGAGGA TACTCCGCTG GCCATTCGTG ACCTGGACCG GGACGATCCC
CCCGCGACCC GGCCCTGA
|
|---|
| Protein sequence | MSEGRVALLD RLAVWRARLS RPARRFTLLP EPGCLGLPER GRWLVAGTHL VEGRLVQAPG
TAPWDLPGAG AAQLADAHGF GWLDDLAGLG DRPARGLARD WTFRWIARFG RGRGPGWTPA
LAAHRLGRWM SHAALLAEAG ERDQATLARA ASQTLRFLER RWTSVCGPAR IEALSAILRA
GLVLEGMERH VTAAAVALGR EAEAQVDAHG AVASRSPEEL AELFAILAEA EAALVAAGRP
VAEAHRAAIH RIVPVLRALR HSDGGLARFH GGGRTVAERV ERALATAAVP AVPAEGAAMG
FLRLSAGRTS VLVDAADPPA GPHAHASTLA FEMSSGRRPV VVSCGSGRAW GTEWHRAGRA
TPSHSTLAIE GFSSSRLGRS GEEMTERARV LSAHRQRGAA GTQLSLVHAG WAETHGLTHR
RELLLAPDGR SLSGSETLAA LTPAEKKRLD AVLKSARGQG ICLALRFHLH ADVRASLEPA
GLGVGLTLAS GERWTFRFEG AARLTLDPSV YLDRAHMLPR ATKQIVLHAV LVGHEARIGW
TLAKTEDTPL AIRDLDRDDP PATRP
|
|---|
| |