| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_2909 |
|---|
| Symbol | |
|---|
| ID | 5084509 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | + |
|---|
| Start bp | 2965670 |
|---|
| End bp | 2966317 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640484479 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_001169100 |
|---|
| Protein GI | 146278941 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.290818 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATC TCTATGCCCC GCCGGACGTG CCGCTTTCGC TGATCCACCA CGACGCGCAG
ATCGTGGTGG TGGACAAGCC TGCGGGCCTC TTGTCCGTGC CCGGCAAGGG CGAGGACAAG
GCCGACTGCC TGATCGAGCG GTTGCGCGGC GTCTTCCCCG AGATCCTGCT GGTGCATCGG
CTCGACCGCG ATACCTCCGG GGTGATGGTC TTCGCCCTGA CGCGGGCCGC GCAGGCCGCC
TTGGGCCAGC AGTTCGAGAA GCGGCAGACG AAGAAGGTCT ATGTGGCCCG CCTTGAAGGC
CGGCTGGAAC CGCGCGAGGG TCGGGTGGAC CTGCCGCTCT GCGTGGACTG GCCGAACCGA
CCGAGGCAGC ATGTGGATCA TGTGAACGGC CGACCGGCCC AGACCGACTG GCGGGTGGTG
AAATATCTGC CGAACGAGAC CCGCGTGCGA CTGATGCCGG TCACGGGGCG CAGCCACCAG
CTCCGCGTGC ACATGGCCGA GACGGGGCAT CCGATCCTCG GCGACGCGCT CTATGCGGCG
GGTGCCGCGC GGGAGCATCC GCGCCTGATG CTTCACGCCG AGAGCCTGCG GGTGCGCCAT
CCCGACACGG GCAAGAGCCT CACCTACAGC GCGCCCTGTC CCTTCTGA
|
|---|
| Protein sequence | MTDLYAPPDV PLSLIHHDAQ IVVVDKPAGL LSVPGKGEDK ADCLIERLRG VFPEILLVHR
LDRDTSGVMV FALTRAAQAA LGQQFEKRQT KKVYVARLEG RLEPREGRVD LPLCVDWPNR
PRQHVDHVNG RPAQTDWRVV KYLPNETRVR LMPVTGRSHQ LRVHMAETGH PILGDALYAA
GAAREHPRLM LHAESLRVRH PDTGKSLTYS APCPF
|
|---|
| |