Gene Rsph17025_2671 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRsph17025_2671 
SymbolaroE 
ID5084459 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodobacter sphaeroides ATCC 17025 
KingdomBacteria 
Replicon accessionNC_009428 
Strand
Start bp2712947 
End bp2713786 
Gene Length840 bp 
Protein Length279 aa 
Translation table11 
GC content70% 
IMG OID640484234 
Productshikimate 5-dehydrogenase 
Protein accessionYP_001168863 
Protein GI146278704 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0169] Shikimate 5-dehydrogenase 
TIGRFAM ID[TIGR00507] shikimate 5-dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.134722 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.358722 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGAAC ATATGCGCAT CCCGCTTGCG GGGGTGATCG GATCGCCCAT CGCCCACAGC 
CGTTCGCCGG CCCTGCACGG CTACTGGCTG AAACGCTACG GCCTGAAGGG CCACTACATC
CCCATGGATG TGGCCCAGGC CGACCTGCGC GAGGTGCTGG CCGCGATGCC GCGGATGGGG
TTCGTCGGCT GCAACGTGAC GATCCCGCAC AAGGAGACGG TGATTGCGCT GGCCGACATC
GTCACCGACC GGGCCGCGCT GATCGGGGCC GCCAACACGC TGATCTTCCG CAAGGACGGC
AAGATCCACG CCGACAACAC GGACGGGGCG GGATTCACCG CCAACCTGCG CCAGAACGCG
CCCGACTGGC AGCCTCAGGC GGCGCCGGCG GTGGTCTGGG GCGCGGGAGG CGCCGCGCGC
GCCGTGATCG CGGCCCTGAT CGAGGTGGGC GTGCCCGAGA TCCGGCTGTC GAACCGCAGC
CGGGCGCGGG CCGATGCGCT GCGCTCGGAC TTCGGGGCCA AGGTGCAGGT CTTCGACTGG
GTTCAGGCCG GCAACATTCT CGAGGATGCG ACGACGGTGG TGAACACGAC CTCGCTCGGC
ATGATCGGCA AGCCGGACTT CCGGGTGCCG CTGGATGCGC TGAGCCCGAA GGCCGTCGTG
ACCGATCTCG TCTATACACC TCTGCGGACG CGGCTTCTCG CCGAGGCCGA GGCCGCCGGC
TGCCGCACGG TGGACGGGCT CGGGATGCTG CTGCATCAGG CCGCGCCGGG GTTCGAGCGG
TGGTTCGGGG TGCGGCCGGA GGTGGACGAG GACACCCGGG CCGCCGTGCT GGCGACATGA
 
Protein sequence
MTEHMRIPLA GVIGSPIAHS RSPALHGYWL KRYGLKGHYI PMDVAQADLR EVLAAMPRMG 
FVGCNVTIPH KETVIALADI VTDRAALIGA ANTLIFRKDG KIHADNTDGA GFTANLRQNA
PDWQPQAAPA VVWGAGGAAR AVIAALIEVG VPEIRLSNRS RARADALRSD FGAKVQVFDW
VQAGNILEDA TTVVNTTSLG MIGKPDFRVP LDALSPKAVV TDLVYTPLRT RLLAEAEAAG
CRTVDGLGML LHQAAPGFER WFGVRPEVDE DTRAAVLAT