| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_2667 |
|---|
| Symbol | trmE |
|---|
| ID | 5084455 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | - |
|---|
| Start bp | 2708756 |
|---|
| End bp | 2710042 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640484230 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | YP_001168859 |
|---|
| Protein GI | 146278700 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0398705 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.380735 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACACGA TCTACGCCTT GGCCAGCGCA CGCGGCAAGG CCGGGGTGGC GGTATTGCGC
CTCTCCGGGC CGCAGGCGTA TGAGGCGGTG GCTGCCTTCG GAGTGTCGTT GCCGGAGGTC
CGGCGTGCGG CGTTGCGACG CCTGACGTGG AACGGCGAGG TGCTCGATGA GGCGCTGATC
CTGTTGTTTG CGGAAGGGGC CAGCTTCACA GGCGAACGTT CGGCAGAGAT ACACCTTCAT
GGCAGCGCGG CCGCTGTCTC GTCGGTCCTT CAGGCCCTCT CGGAACTGCC CGGATTGCGG
CTGGCCGACG CCGGCGAGTT CACGCGACGG GCGCTGGACA ACGGGCGGCT GGATCTGGCC
CAGGTGGAGG GGCTTGCAGA CCTGCTCGAC TCCGAAACGG AGGCCCAGCG GCGGCAGGCG
ATGCGGGTCT TCTCTGGCGC CATCGGCAAG CGTACGGAAC GTTGGCGGTC GGATCTGATC
CGCGCAGCCG CGCTGCTTGA GGCGACGATC GATTTCGCCG ATGAGGATGT TCCGGTTGAT
GTGACGCCTG AAGTGCGGGG CCTTCTGGAG CGCCTGATCT CGGACCTGAA GAGGGAAGTG
GATGGCTCCC GCGTCGCCGA ACGGATTCGC GATGGATTTG AAGTTGCCAT CATTGGCGCC
CCGAACGCTG GCAAGTCCAC GCTTCTGAAT GCGCTGGCAC AGCGCGAGGC CGCCATCACG
TCCGAAGTGG CCGGTACGAC GCGCGATGTC ATCGAGGTGC GGATGAACCT GGGCGGGCTC
GCCGTGACCT TGCTGGACAC GGCCGGGCTG CGCGAAACCC ATGACCCGGT GGAAGCTTTG
GGCATCGATC GGGCGCTGAC ACGGGCTCGG GCGGCCGATC TGCGAATCTT CTTGCTGGAT
CAGAGCGGGG AAGTTGTGGG TCTTGAGCCG GAGGCTGACG ATCTGATCGT GCAGGGGAAG
GCGGACACGC GCCTGACCCG GGGCCTCAGC GTGTCCGGCC TGACGGGCGA CGGCATCCAG
GAACTGGTGG AGGCGCTGCA GGATCGCCTT CTTGCTCGGA CCGCTGGTGC CGGAAGTTTT
ACCCGTGAGC GGCATCGCCT TGCCATGGAG CGGGCGATCA GGGCTATGGA ATCGGCGCAT
GTTCAGCTAA TGCAGGGCGT GCCGCATCCG GAACTCGCGG CCGAGGATCT GCGGCTGGCC
CTGAGGGCGC TGGATTCTCT CGTGGGTCGG GTGGATGTGG AGGCCTTGCT GGGCGAGATC
TTCTCCAGCT TCTGCATTGG GAAATGA
|
|---|
| Protein sequence | MDTIYALASA RGKAGVAVLR LSGPQAYEAV AAFGVSLPEV RRAALRRLTW NGEVLDEALI
LLFAEGASFT GERSAEIHLH GSAAAVSSVL QALSELPGLR LADAGEFTRR ALDNGRLDLA
QVEGLADLLD SETEAQRRQA MRVFSGAIGK RTERWRSDLI RAAALLEATI DFADEDVPVD
VTPEVRGLLE RLISDLKREV DGSRVAERIR DGFEVAIIGA PNAGKSTLLN ALAQREAAIT
SEVAGTTRDV IEVRMNLGGL AVTLLDTAGL RETHDPVEAL GIDRALTRAR AADLRIFLLD
QSGEVVGLEP EADDLIVQGK ADTRLTRGLS VSGLTGDGIQ ELVEALQDRL LARTAGAGSF
TRERHRLAME RAIRAMESAH VQLMQGVPHP ELAAEDLRLA LRALDSLVGR VDVEALLGEI
FSSFCIGK
|
|---|
| |