Gene Rsph17025_2576 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRsph17025_2576 
Symbol 
ID5085191 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodobacter sphaeroides ATCC 17025 
KingdomBacteria 
Replicon accessionNC_009428 
Strand
Start bp2615762 
End bp2617879 
Gene Length2118 bp 
Protein Length705 aa 
Translation table11 
GC content65% 
IMG OID640484139 
Product(p)ppGpp synthetase I, SpoT/RelA 
Protein accessionYP_001168769 
Protein GI146278610 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0223055 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGACG TCGAAGACCT GATCGCCCTG GTCCGCAATT ACAACCCGCG CACCAATGCC 
GACCTCATTC GCCGGGCCTA TGCCTATGGC CGGCAGATGC ACGAGGGGCA GTTCCGCCAC
TCGGGCGAGC CCTATTTCAC CCATCCCGTC GCCGTCGCCG CCATCCTGAC CGAGCAGCGG
CTGGATGATG CGACGATCGT GACCGCGCTG CTGCACGACA CGATCGAGGA CACCAAGTCC
ACCTACACCG AGGTTGCGCG TCTTTTCGGC GATGACATCG CCGAACTGGT GAACGGCGTG
ACCAAGCTCA CCAATCTCGA ACTGTCCTCG GCGCAGTCGA AGCAGGCCGA GAACTTCCGC
AAGCTGTTCA TGGCGATGTC CAAGGACCTG CGGGTGATCC TCGTCAAGCT TGCCGACCGT
CTGCACAACA TGCGCACGAT CAAGTCGATG CGCTCCGAGA AGCAGGCCCA GAAGGCGCGC
GAGACGATGG AGATCTTCGC CCCTCTCGCC GGCCGCATGG GCATGCAGTG GATGCGCGAG
GAGTTGGAAG ACCTCGCCTT CCGCGTGCTG AACCCCGAGG CGCGCAACTC GATCATCCGC
CGCTTCATCA CGCTGCAGCG CGAGACGGGC GACGTGGTCC ACAAGATCAC CGCCGACATC
CGGCTGGAGC TGGAAAAGGC CCAGATCGAG GCCGACGTCT ATGGCCGCGC CAAGAAGCCC
TATTCGATCT GGCGCAAGAT GCAGGAGAAG GACCTCGCCT TCTCGCGGCT GTCGGACATC
TACGGCTTCC GCGTGATCTG CAAGGACGTG GCCGACTGTT ACCGCATCCT CGGCGTGATC
CACCAGCGTT GGCGCGCGGT GCCGGGGCGG TTCAAGGACT ATGTGAGCCA GCCGAAGTCG
AACGGCTACC GCTCGATCCA CACCACGGTC TCGGGGCGCG ACGGCAAGCG GGTCGAGGTG
CAGATCCGCA CCCGCCAGAT GCACGAGGTG GCCGAGGCGG GCGTCGCGGC GCACTGGAGC
TACCGCGAGG GTGTGCGGGT CCACAACCCC TTCGCCGTCG ATCCCGCCAA GTGGATCGCG
AGCCTGACGG AACGGCTCGA CGAGGACGAC CACGACGAGT TCATGGAGAA CGTGAAGCTC
GAGATGTACA CCGACCAGGT GTTCTGCTTC ACGCCGAAGG GCGACGTGAT CCAGCTGCCT
CGGGGGGCGA CGCCGCTGGA TTTTGCCTAT GCCATCCATA CAAGGATCGG CCATTCCACG
GTCTCGGCCA AGATCGACGG CATCCGCGTG CCGCTCTGGA CGCGGCTGAA GAACGGCCAG
TCCGTCGAGA TCATCACCGC CGAGGGCCAG CGTCCGCAGG CCTCCTGGAT CGACATCGCC
ACGACGGGCC GGGCCAAGGC CGCGATCCGC CGCAGCCTGC GCGAGGAAGA CCGGGGCCGC
TTCGTCAAGC TGGGGCAGGA GCTGGCCCGC GCGGCCTTCG ATCATGTGGG CCGCAAGGCG
ACCGACAAGG CGCTCAGGAC CGCGGCCAAG ATGCTCGGAC TGCCGGACGA GACCGAGCTT
CTGGCGCAGC TCGGTTCGGC CGAGCTGACG GCGCGCAAGG TGGTCGAGAC CCTGTATCCC
GAACTCGCGC GCTCGAGCGG CCCCGAGGTG GATGTGCGGC GCCCCGTCGT GGGCCTGTCC
GACGACCAGC AGTTCCGTCG GGCGAAATGC TGTCAGCCGG TGCCCGGCGA GCGGATCGTG
GGCATCACCT ACCGCGGGCA GGGCGTGGTC ATCCATGCCA TCGACTGCCC CGCGCTGGAG
GAGTTCGAAG AGCAACCGTC GCGCTGGATC GACCTGCACT GGCACACCGG CCGCCATGCG
GCGGTGCATA CCGTGACGCT CGATCTGACC ATATCCAACG ACGCGGGCGT GCTTGGCCGG
ATCTGCACCT TGATCGGCGA GCAGAAGGCC AATATCTCCG ACCTGAGGTT CACGGATCGC
AAGCCCGACT TCTACCGTCT TCTGGTTGAT GTGGATCTGC GCGACGTCGA GCATCTGCAT
ACGCTGATGA CGGCTCTCGA GGCCGAAACG GACGTGGCGC AGATCACGCG GCACCGCGAT
CTGAGCAGGA AACCCTGA
 
Protein sequence
MIDVEDLIAL VRNYNPRTNA DLIRRAYAYG RQMHEGQFRH SGEPYFTHPV AVAAILTEQR 
LDDATIVTAL LHDTIEDTKS TYTEVARLFG DDIAELVNGV TKLTNLELSS AQSKQAENFR
KLFMAMSKDL RVILVKLADR LHNMRTIKSM RSEKQAQKAR ETMEIFAPLA GRMGMQWMRE
ELEDLAFRVL NPEARNSIIR RFITLQRETG DVVHKITADI RLELEKAQIE ADVYGRAKKP
YSIWRKMQEK DLAFSRLSDI YGFRVICKDV ADCYRILGVI HQRWRAVPGR FKDYVSQPKS
NGYRSIHTTV SGRDGKRVEV QIRTRQMHEV AEAGVAAHWS YREGVRVHNP FAVDPAKWIA
SLTERLDEDD HDEFMENVKL EMYTDQVFCF TPKGDVIQLP RGATPLDFAY AIHTRIGHST
VSAKIDGIRV PLWTRLKNGQ SVEIITAEGQ RPQASWIDIA TTGRAKAAIR RSLREEDRGR
FVKLGQELAR AAFDHVGRKA TDKALRTAAK MLGLPDETEL LAQLGSAELT ARKVVETLYP
ELARSSGPEV DVRRPVVGLS DDQQFRRAKC CQPVPGERIV GITYRGQGVV IHAIDCPALE
EFEEQPSRWI DLHWHTGRHA AVHTVTLDLT ISNDAGVLGR ICTLIGEQKA NISDLRFTDR
KPDFYRLLVD VDLRDVEHLH TLMTALEAET DVAQITRHRD LSRKP