Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rsph17025_2472 |
Symbol | |
ID | 5083815 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides ATCC 17025 |
Kingdom | Bacteria |
Replicon accession | NC_009428 |
Strand | - |
Start bp | 2520212 |
End bp | 2521912 |
Gene Length | 1701 bp |
Protein Length | 566 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640484034 |
Product | TPR repeat-containing protein |
Protein accession | YP_001168665 |
Protein GI | 146278506 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGAACA TCCTGATGCG GCCGGTTCTG GCTCTGGCGC TGGCGGCGCT TCTGCCGGTG ACGGCGCAGG GACAGCAACA GGATGCGGGG GCCTATCTCG CCGCCCGCGT CGCCGCGGCC AGCAGCGACT ATCGCGCCGC CTCCAACTGG TTCACGCGCG CCCTTGTGGC CGACCCCAAC AACCAGAGCC TGATCGAAGG TGCGCTGATC TCGGACTTTT CGCTGGGCGA GCTGGGCAAG GCCGTGCCCC TGGCCACGCG CCTCACCGAG GCGGGGGCAG GGTCGCAGGC GGCGGCTCTC GTGCTGCTTG CGGACCGCGC GGGCCGCGGG GACTATCAGG CGATCCTCAC GGCGGACGCG ACGGGGCTCG GTCCGCTCGT GGATCGGCTG GCTCTTGCCT GGGCGGCCTT CGGCGCGGGA CGCATGTCCG AGGCGCTCGA AGCCTTCGAC CAGCTTGCGA CGGCGCAGGG GCTTCAGGCC TTCGGCCTCT ATCACAAGGC ACTCGCGCTG GCCGCGGCGG GCGACTTCGA GGGCGCGGAC GAGATCCTCT CGGGGCGCGA CGGCAATGCG CTGCGGGTCA TGCGCCGGGG CTCGATCGCC CACGCGCAGA TCCTGAGCCA GCTCGACCGC AACGCCGATG CGGTGGCCAT GCTGAAACAG AGCTTCGGGA CCGACGCCGA CGCCGGCATC GACGCGCTCG AGGCGCGCCT CCTGGCCGGT GAGACCCTGC CTTACGACGT GGCGCGCAAC GCCACCGAAG GGATGGCCGA GATCTTCTTC ACCCTTGCGG GCGCCCTCAG CGGCGAGGTG GATGACGGCT CGACCCTGCT CTATGCCCGC ACTGCGACCT TCCTGCGGCC CGACCATACC GAGGCCCTGC TGCTCTCGGC GCAGATCCTC GACAATCAGG GCCAGCACCA GCTCGCTTCC GAGACCTATG CGCGCATCCC CACCTCGGAC CCGATGTTCT TCGTGGCCGA GATCGGCCGT GCCGAGGCGC TTCGGGCCGA TGGCAAGACC GAGGCCTCGC TCGAGGTGCT GCAGGCGGTC GCGCGCAGCC GGTCGGATCT GATGCAGGTC CATCTCGCAC TCGGCGATGC GCTGCGCCGC GAGGAACGCT ACGCCGATGC GGTGGCGGCC TATGACGCCG CCATCGCCCG CGTCGCCGCG CCCGAGCGGC AGCACTGGCC GCTCTTCTAC AGCCGCGGCA TCTGCCACGA GCGGCTGTCG CACTGGACCG AGGCGGAGGC CGACTTCCGC AAGGCCCTCG CGCTCAACCC GGACGAGCCG CAGGTGCTGA ACTACCTCGG CTATTCCTTC GTGGATCGGG GTGAGAACCT CGAGGAGGCG CTCTCGATGA TCGAGCGCGC CGTCGCCGCG CGCCCCGAGA GCGGCTACAT CATCGACAGC CTCGCCTGGG CCTATTTCCG TCTTGGCCGC TACCAGGATG CGGTCGAGCC GATGGAGAAG GCCTCGGTCC TGGAGCCGGT CGATCCGATC GTCACCGACC ACCTCGGCGA TGTCTATTGG GCCGTCGGGC GCAAGCTCGA GGCCCGTTTC CAGTGGCGCC GCGCGCTCTC CTTCGACCCG GAGGAAAAGG AGGCGCAACG CATCCGCCGC AAGCTCGAGG TCGGCCTCGA TGCGCTGCTG GCGGAGGAAG GCGCAAAACC CTTGTCCGTA GCCGTAAGAG CGAATGACTG A
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Protein sequence | MANILMRPVL ALALAALLPV TAQGQQQDAG AYLAARVAAA SSDYRAASNW FTRALVADPN NQSLIEGALI SDFSLGELGK AVPLATRLTE AGAGSQAAAL VLLADRAGRG DYQAILTADA TGLGPLVDRL ALAWAAFGAG RMSEALEAFD QLATAQGLQA FGLYHKALAL AAAGDFEGAD EILSGRDGNA LRVMRRGSIA HAQILSQLDR NADAVAMLKQ SFGTDADAGI DALEARLLAG ETLPYDVARN ATEGMAEIFF TLAGALSGEV DDGSTLLYAR TATFLRPDHT EALLLSAQIL DNQGQHQLAS ETYARIPTSD PMFFVAEIGR AEALRADGKT EASLEVLQAV ARSRSDLMQV HLALGDALRR EERYADAVAA YDAAIARVAA PERQHWPLFY SRGICHERLS HWTEAEADFR KALALNPDEP QVLNYLGYSF VDRGENLEEA LSMIERAVAA RPESGYIIDS LAWAYFRLGR YQDAVEPMEK ASVLEPVDPI VTDHLGDVYW AVGRKLEARF QWRRALSFDP EEKEAQRIRR KLEVGLDALL AEEGAKPLSV AVRAND
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