| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_1493 |
|---|
| Symbol | hfq |
|---|
| ID | 5084742 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | + |
|---|
| Start bp | 1525242 |
|---|
| End bp | 1525475 |
|---|
| Gene Length | 234 bp |
|---|
| Protein Length | 77 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640483050 |
|---|
| Product | RNA-binding protein Hfq |
|---|
| Protein accession | YP_001167692 |
|---|
| Protein GI | 146277533 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1923] Uncharacterized host factor I protein |
|---|
| TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.964703 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.207081 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGCCG ATAAACAAAA CTTGCAGGAC GCCTTTCTGA ACCACGTCAG AAAGGCAAAG
GTTCCGGTAA CGATTTTTCT CATCAACGGT GTTAAACTGC AGGGCGTGAT TACCTGGTTC
GACAATTTCT GCGTCCTGCT GCGCCGGGAT GGACAGTCGC AGCTGGTCTA CAAGCACGCG
ATCTCGACCA TCATGCCCGG CCAACCGATC AACCTCTACG AGGGCGACGA CTGA
|
|---|
| Protein sequence | MAADKQNLQD AFLNHVRKAK VPVTIFLING VKLQGVITWF DNFCVLLRRD GQSQLVYKHA
ISTIMPGQPI NLYEGDD
|
|---|
| |