| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_1218 |
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| Symbol | |
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| ID | 5084502 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides ATCC 17025 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009428 |
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| Strand | - |
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| Start bp | 1260095 |
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| End bp | 1262635 |
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| Gene Length | 2541 bp |
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| Protein Length | 846 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640482776 |
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| Product | ATP dependent DNA ligase |
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| Protein accession | YP_001167424 |
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| Protein GI | 146277265 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.257773 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGAAG CCGCGCGCCC CCAGGATCTC GAACGCTACC GGGCCAGGCG CGACTTCGCC
CGCACGCCCG AGCCGGACGG ACGCACGCCC GAGGATCGCG CGGGCGCGCT CCGCTTCGTG
GTGCAGAAAC ACGCCGCCCG CCGCCTTCAT TGGGACTTCC GGCTGGAATG GAACGGGGTG
CTGCTCAGCT GGGCCGTCAC GCGCGGGCCA TCGGCCGACC CGTCCGCCCG CCGCCTGGCC
GTCCGCACCG AGGATCACCC GATCGACTAC GCCGGCTTCG AGGGCACCAT CCCCAAGGGC
GAATATGGCG GGGGCACCGT GATGCTCTGG GATCGCGGGA CGTGGGAGGC GCTCGACGAC
GTCAACAAGG GGTTGAGCGA GGGCCGGCTC AAGTTCCGCC TCGAGGGCGA GCGGATGCGC
GGCGGCTGGA TGCTCGTGCG CCTCAAGCCA CGCGCGGGCG ACAAGGGCGA GAACTGGCTG
CTGATCAAGG AGCATGACGC GCACGAACGG CCGGGGCCCG AGGGGCTGGT CGAGGCCCAT
GTGACCTCTG TCGAGAGCGG CCGTCGCATG GAGGAGATCG CCGAGGGGCG CAGGCCGCGC
CAGCGCCGCA AGCCGGCCGC CCCGCCCCGG TTCCGGCCCC TCCAGCTTGC GCGCCTCGTG
CCGGCCGCGC CGGACGGGCC GGACTGGCTG CACGAGACGA AGTTCGACGG CTATCGCTGC
CTCGCCGCGC TCGCGGACGG CAAGGTGCGC CTCCACACCC GTTCGGGGCT GGACTGGACG
GACAAGTTCG GCACGCTGGT GCCCGACCTC GCGCGCCTCG CGGTCGGGCG GGCGCTGATC
GACGGCGAGG TGATCGCCCC CGGAGAAGCG AGCGGCGCCT TCTCCGAACT GCAGGCGCGC
CTCAAGACCG GGGGGACGCT CGCCTTCATG GCCTTCGACC TGCTGGCCCT CGATGACGAG
GATCTGACCG GCCTGCCCCT GCTGGAGCGC AAGGCACGGC TCGAGAGCCT TCTGGAGGGA
GAGACGGGCG CGATCCACTA CTCGACCCAC ATCCGGGGCC ACGGCCCCGA GGTGCACGAG
CGGATGTGCG CGGCCGGGCA GGAGGGGATC ATCTCGAAGC GGGTCGAAGC TCCCTATTCC
GGCACGCGGA ACGGCGACTG GCTCAAGGTG AAATGCGTCC TCCGTCAGGA GTTCGTGATC
TGCGGCTGGA AGGCGTCGGA CAAGCCCGGC CGCCCCTTCG CCTCGCTCGT GATGGGCAGC
TACGAGACGG GCCGCCTGAC CTGCAGGGGC GCGGTCGGCA GCGGCTTTGA CGCGCGGACC
TTCCGCGAGC TGAAGCCCCT GCTGGCCGGG CGCGCGCGCG CCACCTCTCC GTTCGGCCAT
GTCCCTGAGG GGGCCGAGGG CGCGCGCTGG CTGCGCCCTG ATCTGGTGGC CGAGGTGACC
TTCACCGAAT TGACGCGCGA CGGGCACATC CGCCACGGCG TCTTTGCGGG CCTGCGCGAC
GACAAGCCCG CCCGCGACGT GCGGCTCGAG GCGCCGGAGG ACGCCTTGGC CGAGGATGCA
GCCCCCCCGA AGCCGCCGGC GCGCGCGCCG CGCGAAGGCA GGACGAACGA GGATCCCATG
CCCCAAGCCG ACAATGACGT GCGGGTGGCC GGCATCCGCA TCAGCAATCC CGACCGCAGG
ATCTATGAGC GGCCCGCCGT GACCAAGCGC GAGGTGGCCG AGCATTACGA GGCGCTCGGC
CCGCGGATGC TGCCGTTCCT GCGCGACAGG CCGGTGTCGC TGGTGCGCTG CCCGGACGGC
GCGGCGGGCG AGTGTTTCTT CCAGAAGCAC CGGACCCGCG GCATGCCCTC GGCGATCCGC
ACCGTGAAGG TCGAGACGAA GTCCGGGCCC GAGGATTACA TCACCCTCCC CGATGTCCCG
GCCCTCGTCG GGGCGGCGCA GATGGGCGCG CTCGAGTTCC ACATCTGGGG ATCGCGCAAC
CGCCGCCTCG AGCGGCCGGA CCGGATGGTC TTCGACCTCG ATCCCGACGA GGGCCTCGAC
TTCGCCCGCG TGCGCGAGGC GGCAGCAGAG CTGCGCGTGC GTCTCGACGA TCTGGGCCTG
CCCGCGGTGC CGATGCTGTC GGGGGGCAAG GGCGTGCATG TGATCGTGCA GCTGAAGCCC
GCGGCCGAAT GGGAGAGCGT GAAGCTCTTC ACGCGCGCGC TCTCGACCCT GCTCGCGGAA
GAGGCGCCCG ATCGCTACAC CGCCGCGATG GCGAAGGCCG GCCGCAAGGG CCGGATCTTC
ATCGACTGGC TGCGCAACGA CCGCGGCTCG ACCGCCGTCG CCCCCTACAG CCTGCGCGCG
CGGCCCGGTG CAACGGTGGC GACCCCGATC ACATGGGACG AACTGGCCCG CGCCCGCTCG
GCCGGAGACT GGACGATCCG CTCGATCCGC GAGCGGCTCG AGGGCCCCTG CCCGCTGGCC
GAGGCCCGCC CCGTGACACT CGGGCGGACG GTGATCGGCC GGCTTGAACG ACTGGTGACG
CAATTCAAGG AGGGGACATG A
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| Protein sequence | MSEAARPQDL ERYRARRDFA RTPEPDGRTP EDRAGALRFV VQKHAARRLH WDFRLEWNGV
LLSWAVTRGP SADPSARRLA VRTEDHPIDY AGFEGTIPKG EYGGGTVMLW DRGTWEALDD
VNKGLSEGRL KFRLEGERMR GGWMLVRLKP RAGDKGENWL LIKEHDAHER PGPEGLVEAH
VTSVESGRRM EEIAEGRRPR QRRKPAAPPR FRPLQLARLV PAAPDGPDWL HETKFDGYRC
LAALADGKVR LHTRSGLDWT DKFGTLVPDL ARLAVGRALI DGEVIAPGEA SGAFSELQAR
LKTGGTLAFM AFDLLALDDE DLTGLPLLER KARLESLLEG ETGAIHYSTH IRGHGPEVHE
RMCAAGQEGI ISKRVEAPYS GTRNGDWLKV KCVLRQEFVI CGWKASDKPG RPFASLVMGS
YETGRLTCRG AVGSGFDART FRELKPLLAG RARATSPFGH VPEGAEGARW LRPDLVAEVT
FTELTRDGHI RHGVFAGLRD DKPARDVRLE APEDALAEDA APPKPPARAP REGRTNEDPM
PQADNDVRVA GIRISNPDRR IYERPAVTKR EVAEHYEALG PRMLPFLRDR PVSLVRCPDG
AAGECFFQKH RTRGMPSAIR TVKVETKSGP EDYITLPDVP ALVGAAQMGA LEFHIWGSRN
RRLERPDRMV FDLDPDEGLD FARVREAAAE LRVRLDDLGL PAVPMLSGGK GVHVIVQLKP
AAEWESVKLF TRALSTLLAE EAPDRYTAAM AKAGRKGRIF IDWLRNDRGS TAVAPYSLRA
RPGATVATPI TWDELARARS AGDWTIRSIR ERLEGPCPLA EARPVTLGRT VIGRLERLVT
QFKEGT
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