Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rsph17025_1053 |
Symbol | |
ID | 5083345 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides ATCC 17025 |
Kingdom | Bacteria |
Replicon accession | NC_009428 |
Strand | + |
Start bp | 1079518 |
End bp | 1080060 |
Gene Length | 543 bp |
Protein Length | 180 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640482610 |
Product | cold-shock DNA-binding domain-containing protein |
Protein accession | YP_001167259 |
Protein GI | 146277100 |
COG category | [K] Transcription |
COG ID | [COG1278] Cold shock proteins |
TIGRFAM ID | [TIGR02381] cold shock domain protein CspD |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTGGAAG ACGAAAAGGC CCTGCAGCTT GTGCATGGCC GTGTGAAATG GTTCGATCCG GCAAAAGGCT TCGGGTTCAT CGTGACCGAG GAGAACGGAG CCGATATCCT GCTCCACGCC AATGTCCTTC GGAACTATGG CCAGAGTTCG GTGGCGGACG GGGCGGGCAT CACCGTAAAG GTCCAGAGCA CCCAGCGGGG CGTTCAGGCC GTCGAGGTGG TCGAGATCGA GCCGCCGGCC GGGACGACGT TCCAGCTGAG CGAGGACAGC GAGGCCACGA CCCCCGAGGA GATCGCCTCG CGTCCGCTCG AGCCGGGCCG GGTGAAATGG TTCGACAAGG GCAAGGGCTT CGGCTTCGCC AATGTCTTCG GCCGGTCCGA GGATGTCTTC ATCCATGTCG AGGTCCTGCG GATGTCGGGC TTCGCCGACC TTGCCGCGGG CGAGGCGGTG GCGCTGCGCA TCATCGAGGG GCGGCGCGGG CGCATGGCGG TGCAGGTGGT CTCATGGGAA GCGGCGGCGC GTCAGCATCA GCAACCGGTC TGA
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Protein sequence | MVEDEKALQL VHGRVKWFDP AKGFGFIVTE ENGADILLHA NVLRNYGQSS VADGAGITVK VQSTQRGVQA VEVVEIEPPA GTTFQLSEDS EATTPEEIAS RPLEPGRVKW FDKGKGFGFA NVFGRSEDVF IHVEVLRMSG FADLAAGEAV ALRIIEGRRG RMAVQVVSWE AAARQHQQPV
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