| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_0641 |
|---|
| Symbol | |
|---|
| ID | 5082985 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | - |
|---|
| Start bp | 641638 |
|---|
| End bp | 643407 |
|---|
| Gene Length | 1770 bp |
|---|
| Protein Length | 589 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 640482198 |
|---|
| Product | peptidoglycan binding domain-containing protein |
|---|
| Protein accession | YP_001166852 |
|---|
| Protein GI | 146276693 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.757288 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAGAC AGGCGATCTT CCTTCTGTGG CTGGCAGTCT TCCCGGCGGC CGCGCCCCTC
GCGGCTCAGG AACAGGCGCA GGTCTGGGTG CAGATCGAGG CCCGCCCCAC CGAAGCCGAG
GCGGACGCGC GCGCCCGCGC CTATGCCGAG CTGTTCCCCG ACGTGTCGGG CTACCGGCTC
GCCTCGGGCT GGTACGGGAT CGTGCTCGGC CCCTACGGCC CCGAGGTGGC GCGGCTGCGG
CTGCAGGATC TGCGCGACGC GGGCATGATC CCGCCCGACA GTTTCATCGC CGACGGACGC
AACTTCCGCG AAGCCTTCGC CGCTCCGGGG CAGGTGCGCC CCGAGATCGA GGCGCTGGCA
GTGCCCGGCC CCGAGCCCAT CCCGGACGAG GACGCCGCCG TGGCAACGCC CGTGGCCCCG
CTCGAGGCGG CACCGCCGCT GCCGGACGAG ACGCCGGCCG AGGCGCAACA GTCCGAGGCG
CGGCTCTCGC TTGCCGAGCG GCAGGAACTG CAGGCCGCGC TGCAATGGTT CGGCTTCTAC
GCGGCCGCGA TCGACGGCGC CTTCGGTTCG GGCACGCGGG CCTCGATGGC GGCCTGGCAG
GGCTCGCAGG GCCTTGAGGC GACGGGCGTT CTGACCGCGC GCCAGCGGGC GGCCCTGCTG
GACAGCTACG ATCGCGCGCA GGCGGAACTG GGGCTCGAGA CGGTGACCGA GGAAGAGGCG
GGCATCCGCA TGATCCTGCC CACCTCCCTC GTCCGGTTCG ACCGCTACGA CCCGCCCTTC
GTCCATTATG CCCCGCTCGA GGACTCGGGC GTGCAGGTGA TGCTCATCTC CGAGCCGGGC
GATCAGGGCA CGCTCTTCGG GCTTTACGAC ATCCTCCAGA CGCTCGAGGT GGTTCCGCCG
GAGGGCAACC GCGAACGCAG CGCCAGCTCC TTCACCATCG AGGGGCGGTC GGACACGCTG
GCCAGCTACA CCCACGCCGA ACTGCGCGGC GGGCTGATCA AGGGCTTCAT GCTGGTCTGG
CGGCCCGACG AGGACGAGCG CATGGCGCGG GTGCTGACGG CGATGCGGTC GAGCTTCCGC
CCCTTCGGCG ACCGCGCGCT CGATCCCGGC ATGGTGGAGC TGAGCGAGGA ACAGCGGCGC
GGGATGCTGG CCGGGCTCGA GGTGCGCAAG CCGCGCCAGT CGCGCTCGGG GATCTTCGTG
GATGCCAAGG GCACGGTCCT GACCTCCGCC GAGGCGGTGG CGGGCTGCGG CCGGGTGACG
ATCGACCGCG ATCACGAGGC GCGGGTGGTG CTGGCCGACC CCGCCCTCGG GATCGCGGTG
CTGAAGCCGG AGCGCGCGAT GGCCCCGCGC GTCACCGCCA GTTTCCGCAG CGGCGCGGCG
CGGCTCGGCT CGCCCGTGGC CCTGGCGGGC TATCCCTACG AGGAGGTGCT GCCCGCCCCC
ACCCTGACCT TCGGCACGCT GGACGGGCTG ACGGGGCTGG AGGGCGAGCC GAACCTGCGC
CGGCTGAGCC TTGTGGCACG GCCGGGCGAT GCCGGCGGGC CGGTGCTCGA CGGCTCGGGC
GCGGTGCTGG GCATGCTGGT GGCGCGGCCG CAGGGCGCCC GGCAGCTGCC GGCCGAGGTC
TCCTTCGCCC TCGCGCCCGA GGCGCTGACG GCCCGGCTCG CGGAGGCGGG CGTCCTGCCC
CGCATGTCCG AAGGCGGAGG CGCGCTCGCG CCCGAGGATC TGGCCCGTCT GGGCGATGGA
ATGACGGCGC TCGTCTCCTG CTGGGACTGA
|
|---|
| Protein sequence | MMRQAIFLLW LAVFPAAAPL AAQEQAQVWV QIEARPTEAE ADARARAYAE LFPDVSGYRL
ASGWYGIVLG PYGPEVARLR LQDLRDAGMI PPDSFIADGR NFREAFAAPG QVRPEIEALA
VPGPEPIPDE DAAVATPVAP LEAAPPLPDE TPAEAQQSEA RLSLAERQEL QAALQWFGFY
AAAIDGAFGS GTRASMAAWQ GSQGLEATGV LTARQRAALL DSYDRAQAEL GLETVTEEEA
GIRMILPTSL VRFDRYDPPF VHYAPLEDSG VQVMLISEPG DQGTLFGLYD ILQTLEVVPP
EGNRERSASS FTIEGRSDTL ASYTHAELRG GLIKGFMLVW RPDEDERMAR VLTAMRSSFR
PFGDRALDPG MVELSEEQRR GMLAGLEVRK PRQSRSGIFV DAKGTVLTSA EAVAGCGRVT
IDRDHEARVV LADPALGIAV LKPERAMAPR VTASFRSGAA RLGSPVALAG YPYEEVLPAP
TLTFGTLDGL TGLEGEPNLR RLSLVARPGD AGGPVLDGSG AVLGMLVARP QGARQLPAEV
SFALAPEALT ARLAEAGVLP RMSEGGGALA PEDLARLGDG MTALVSCWD
|
|---|
| |