| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_0456 |
|---|
| Symbol | secD |
|---|
| ID | 5082255 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | + |
|---|
| Start bp | 451599 |
|---|
| End bp | 453263 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640482009 |
|---|
| Product | preprotein translocase subunit SecD |
|---|
| Protein accession | YP_001166667 |
|---|
| Protein GI | 146276508 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0342] Preprotein translocase subunit SecD |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.171448 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0964807 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCCATT TCCCCGTTTG GAAGCGCGTT CTGATCTGGG GCATCTGCGC CCTTGCGATC
CTCTACGCCG CGCCCAACTT CCTCTACGGC CGTGTCGAAT CCCACAACGA TGCGGTTGCC
GCCATCGAGA AGGCCGGGGG AACAGCCACC CCCGAGCAGG CGGAGGCGGT GGCGCTCTGG
CCCGACTGGC TGCCCTCGAG CATCGTCAAC CTCGGGCTCG ACCTTCGCGG CGGGGCGCAC
CTGCTCGCCG AGGTCCGTGT CGAGGATGTC TATGAGGCCC GGATGGACGG GCTCTGGCCC
GAGGTGCGCG ACGCCCTGCG CGGCCTGCGC GACCAGGTGG GCTCGATCCG ACGCCAGACG
GCCCCCGCGG GCGAGCTGCG CATCGCCATC TCGCGCCCCG AGGGGATGCC CGCCGCGCTG
GACGCCGCGC GCAAGCTGGC CCAGCCGGTG ATTTCCTTCA CCGGCATGGG GCAGAGCGAC
ATCGAGGTGT CGAGCCAGAA CGACGTGCTG GTGATCCGCC TGACGGATGC CGAACGCACG
GCGATGGACA GCCGGACCGT TCAGCAGAGC CTCGAGATCA TCCGCCGGCG TGTCGATGAG
GTGGGCACGC GCGAGCCCAC CATCCAGCGC CAGGGCGAGG ACCGGATCCT GATCCAGGTG
CCCGGCATCG GCTCGGCCGC CGAACTCAAG TCGCTGATCG GCACCACGGC CAAGCTGACC
TTCCACCCGG TCCTGAGCCG CACCGCCGAG GCGCCGCCAA GCGCCAGTGG CGACCTCGTG
CTGCCGGCCT CCAACGAGCA GGGGATCTAC TACGTCCTCG AGCGCGCGCC CGTCGTGACG
GGCGAGGAGT TGGTCGATGC CCAGCCCTCG TTCGACCAGA ACAACCGCCC GGCCGTGAGC
TTCCGCTTCA ACCCCTCGGG GGCGCGGCTC TTCGGCGACT ATACCGCGCA GAACATCGGC
AAGCCCTTTG CGATCGTGCT TGATGACGAG GTGATCTCGG CGCCGGTGAT TCAGGCCCAT
ATCGCGGGCG GATCGGGCAT CATCACCGGC AACTTCTCGG TCGAGGAGTC GACGGAACTC
GCGGTCCTGC TTCGCGCGGG TGCGCTTCCG GCCGAGATGA CCTTCCTCGA GGAACGCACC
ATCGGCCCCG AGCTGGGGCA GGATTCCATC GATGCCGGCC GCACCGCGGC CATCGTCGGC
ATGATCGCCG TCGTGGCCTT CATGATCGCT AGCTACGGCT GGTTCGGCGT GCTGGCCAAC
ATCGCGCTCG CGATCAACAT GATGGCGATC CTGGCGCTTC TGTCCGTGAT CGGGGCGACC
CTGACGCTGC CCGGCATCGC CGGCATCGTG CTGACCATCG GCGTTGCGGT CGATGCCAAC
GTGCTGATCT TCGAGCGCAT CCGCGAGGAA CTGCGGCAGG GCAAGATGCC CGCGCGGGCC
ATCGAGCTTG GCTTTCAGAA GGCCTTCTCG GCGATCCTCG ACGCGAACGC GACCACCTTC
CTCGTCGCCG TCATCATGTT CCTCGTGGGT GCGGGGCCGG TGCGGGGCTT TGCCGTCACG
CTGACCATCG GCATCTTCAC CTCGGTCTTC ACGGCCGTCT ATGTCACCCG GATCCTTGTC
GCCACCTGGT TCGCCTGGCG GCGGCCGCGT GCGATCGTCG TCTGA
|
|---|
| Protein sequence | MLHFPVWKRV LIWGICALAI LYAAPNFLYG RVESHNDAVA AIEKAGGTAT PEQAEAVALW
PDWLPSSIVN LGLDLRGGAH LLAEVRVEDV YEARMDGLWP EVRDALRGLR DQVGSIRRQT
APAGELRIAI SRPEGMPAAL DAARKLAQPV ISFTGMGQSD IEVSSQNDVL VIRLTDAERT
AMDSRTVQQS LEIIRRRVDE VGTREPTIQR QGEDRILIQV PGIGSAAELK SLIGTTAKLT
FHPVLSRTAE APPSASGDLV LPASNEQGIY YVLERAPVVT GEELVDAQPS FDQNNRPAVS
FRFNPSGARL FGDYTAQNIG KPFAIVLDDE VISAPVIQAH IAGGSGIITG NFSVEESTEL
AVLLRAGALP AEMTFLEERT IGPELGQDSI DAGRTAAIVG MIAVVAFMIA SYGWFGVLAN
IALAINMMAI LALLSVIGAT LTLPGIAGIV LTIGVAVDAN VLIFERIREE LRQGKMPARA
IELGFQKAFS AILDANATTF LVAVIMFLVG AGPVRGFAVT LTIGIFTSVF TAVYVTRILV
ATWFAWRRPR AIVV
|
|---|
| |