| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_0302 |
|---|
| Symbol | |
|---|
| ID | 5084160 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | - |
|---|
| Start bp | 298898 |
|---|
| End bp | 300352 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640481857 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_001166517 |
|---|
| Protein GI | 146276358 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCTCGC GCTACCGCAA GTCTCCCGAC GGCCAGAAGC CCGCGCCCTC GGCGGCGGTG
GGGGCGGCGA CGCCGTCGGT CACCGCTCCG GCCGCGCCCG CCCCGGCCAA ACCCGTTCCC
GCCCGCCCGG GCCCCTCCGT TCCGCGTCCG GGCGCCGAGG CCATCGCAAG CGACAAGGAA
AAGAAGCGCC GCGAACGGCT GATGGAGCTG AAGGTCGAGC TTCACCGCCG GCTGCTCGAC
AACCTCAACC TCGCCGCCCT CGAAAAGGCG TCCGAATCCA GCCTCCGCAC CGAAATCGCC
GCCATCTGCG GCGAGGCGCT CGAGGAGATG AGCGTCGTCC TCAACAAGGA AGAGCGCACG
ATCCTCAACC AGGAGCTTTA CGACGAGGTG ATGGGCCTCG GCCCGCTCGA GCCGCTGCTC
AAGGATGAGA CGATCAACGA CATCCTCGTG AACGGCCCGA ACCGGATCTT CGTCGAGCGC
GGCGGCCGGC TGGAGCTGAC CGACACGACC TTCAAGGACG AGCGGCACCT GCTGCGGATC
ATCGACAAGA TCGTCTCGGC CGTGGGCCGG CGCGTCGATG AATCGACCCC CTATGTCGAT
GCCCGCCTCG CCGACGGCTC GCGCTTCAAC GCGATGGTGC CGCCGATCGC GGTGGACGGC
TCGCTCGTCT CGATCCGCAA GTTCAAGAAG GACAAGCTGG GGATCGCCGA TCTCGTGCGC
TTCGGCGCCT TCACAGAAGA GATGGCGGCC TATCTGCAGG CCGCGGTGGC GACGCGCCTG
AACATCATCG TCTCGGGCGG CACGGGCTCG GGCAAGACCA CCACGCTGAA CGCGCTGTCC
TCCTTCATCG ACCATTCCGA GCGGATCCTC ACCATCGAGG ACACGGCCGA GCTTCAACTC
CAGCAGGTCC ATGTGGGCCG CATGGAAAGC CGGCCCCCGA ACGTCGAGGG CAAGGGCGCG
GTGACGCAGC GCGACTGCCT GCGGAACGCG CTCCGGATGC GCCCCGACCG GATCATCGTG
GGCGAGACCC GCGGCGAAGA GGTCATCGAC ATGCTGCAGG CCATGAACAC CGGCCACGAC
GGCTCCATGA CCACGATCCA CGCCAACTCG GCCCGCGACG GGATCAGCCG TCTCGAGAAC
ATGGTGGCGA TGGCGGGAAT CGAAATGCCG ATCAAGGCGG TGCGCGCCCA GATCGCCTCG
GCCGTCAACC TCATCGTGCA GGCCAGCCGC CTGCAGGACG GCTCGCGCCG CATGGTCTCG
ATCACCGAGA TCACCGGGAT GGAGGGCGAC GTGATCTCGA TGCAGGAGAT CTTCCGCTAC
GAGCGTCTCG GGGTCGAGCC GTCGGGCAAG ATCGTCGGCC GCTTCAACGC TACAGGCGTG
CGCTCGCATT ACTCGGACCG CTTCCGCCAG TGGGGCTACA ACCTGCCCGC CTCCATCTAC
GAACCGATCG TCTGA
|
|---|
| Protein sequence | MFSRYRKSPD GQKPAPSAAV GAATPSVTAP AAPAPAKPVP ARPGPSVPRP GAEAIASDKE
KKRRERLMEL KVELHRRLLD NLNLAALEKA SESSLRTEIA AICGEALEEM SVVLNKEERT
ILNQELYDEV MGLGPLEPLL KDETINDILV NGPNRIFVER GGRLELTDTT FKDERHLLRI
IDKIVSAVGR RVDESTPYVD ARLADGSRFN AMVPPIAVDG SLVSIRKFKK DKLGIADLVR
FGAFTEEMAA YLQAAVATRL NIIVSGGTGS GKTTTLNALS SFIDHSERIL TIEDTAELQL
QQVHVGRMES RPPNVEGKGA VTQRDCLRNA LRMRPDRIIV GETRGEEVID MLQAMNTGHD
GSMTTIHANS ARDGISRLEN MVAMAGIEMP IKAVRAQIAS AVNLIVQASR LQDGSRRMVS
ITEITGMEGD VISMQEIFRY ERLGVEPSGK IVGRFNATGV RSHYSDRFRQ WGYNLPASIY
EPIV
|
|---|
| |