| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_0115 |
|---|
| Symbol | |
|---|
| ID | 5082523 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | - |
|---|
| Start bp | 117080 |
|---|
| End bp | 118816 |
|---|
| Gene Length | 1737 bp |
|---|
| Protein Length | 578 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640481670 |
|---|
| Product | type I secretion system ATPase |
|---|
| Protein accession | YP_001166331 |
|---|
| Protein GI | 146276172 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.869815 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGGAA TGGACATTCG CAAGGGGCTG GCGGAGTTGC GGGCCGCGCG ACACAGCTCG
ATGGGCGCTC TGGCCGCGGT TTTTCTCTTC AGCATCTTCG TGAACCTGCT GATGCTGACC
GGGCCGCTCT ACATGCTTCA GGTCTATGAC CGGGTGCTCG GTTCGGGATC GGAAGAGACG
CTCCTCGCGC TCTCGCTCCT GGTGACCTTT CTCTTTCTGG CCATGGGTTT CCTCGACCAT
GCCCGCGCCC GCGTGATGGC GCGCGTGGGC GCGGGCTTTC AGGAGAAACT GGATCGCCGG
GTGTTCGAGG CATCGGTCCG CAGGCTCTCG CTGGCCCCCG GCGATCCGTC CGCCGTGGCT
GCCCAACGCG ACCTCGAGGC GGTGCAGCGC CTGTGGGCGT CCCCGGTGCT GATCGCGCTC
TTCGACATCC CCTGGACGCC CCTGTTCATC GCCGCGATCT TCATCTTTCA TCCCTGGATG
GGATGGCTGG CCGTCGGTGG CGGCGCCGTG CTCGTGATGG TGACGCTGCT GAACCAGCGC
CTGTCCGAGG GGCCGATGCA GCGCGCCAAC ATGGTCTCGT TGCAGGCGGA CCGTTTCGCC
GAGAATCTGA AGTCCGAATC CGAAGTGGTG CAGGCGCTGG GCATGGCCGG CAACGGCTTC
GACCGCTGGC AGAAGGCGCG TTCGGTGGCC CTCGCGTCGA ACATGTCGGC GTCCGACCTC
ACGGGCGCCT TCGGCACGCT GACCAAGACG CTCCGTCTCT TCCTGCAGTC GGCGATGCTG
GGTCTGGGCG CCTGGCTCGT CCTGCAACAG GAGCTGACCG CCGGTGCGAT GATCGCCGGC
TCGATTCTGA TGGGTCGGGC CCTCGCCCCG ATCGAAAGCG CCATCGGCCA ATGGTCGCTC
GTGCAGCGCG CCAGCGAAGG GTGGAAGCGG CTGGGAGAGC TGTTGTCGCG TCAGCCGGTC
GAACCGGCAC GCATCGCCCT CCCGCGGCCG CGAGCCCTGA TCGAGGCCCA GAACCTGACC
GTCGTTCCAC CGGGAGAGAT GACGCCCGTC CTGCGCGGCG TGACATTCCG GCTCGAACCA
GGCCAGGCGC TCGGGGTGAT CGGCCCGTCC GGCTCCGGGA AGTCCACGCT CGCGCGCGCG
CTCATCGGCG TCTGGCGCCC GGCGGCGGGT CATATGCGCC TCGATGGTGC GGCGCTGGAC
CAGTATGATC CCGACGTGCT GGGCGGCTAC ATCGGCTACC TCCCACAACG CGTGACGCTC
TTCGAGGGCA CGATCGGAGA GAACATTGCC CGTCTCCGCG GTGCACCGGA TGGCGAGGCG
GTGGTCGCGG CCGCGCGCAA GGCCGCCGCC CATGACATGA TCGTGGCCCT GCCTTCCGGC
TACGACACCC GTGTGTCGGC GCTGGGCGGC CGCCTCTCCG GCGGCCAGAT CCAGCGAATC
GGCCTGGCGC GGGCCATGTT CGGAAATCCG GTGTTCCTCG TTCTGGACGA GCCCAACTCG
AACCTGGACA ATGAGGGGTC ACTGGCCCTC AACGCGGCGA TCCGCGTGAT GAAGCAGGCC
GGAGGGTCGG TCTTCATCAT GGCGCACCGG CCCGCCGCCA TTCAGGAATG CGATCTGTTG
ATGGTGATGG AAAACGGCAT GCGCGCGGCC TTCGGCCCGC GCGACACGGT CCTGCGCGAA
ATGGTCAAGA ACCACACCGA GATCGTCCGA AACGCCGGCC CCGGAGGCGT GTCATGA
|
|---|
| Protein sequence | MNGMDIRKGL AELRAARHSS MGALAAVFLF SIFVNLLMLT GPLYMLQVYD RVLGSGSEET
LLALSLLVTF LFLAMGFLDH ARARVMARVG AGFQEKLDRR VFEASVRRLS LAPGDPSAVA
AQRDLEAVQR LWASPVLIAL FDIPWTPLFI AAIFIFHPWM GWLAVGGGAV LVMVTLLNQR
LSEGPMQRAN MVSLQADRFA ENLKSESEVV QALGMAGNGF DRWQKARSVA LASNMSASDL
TGAFGTLTKT LRLFLQSAML GLGAWLVLQQ ELTAGAMIAG SILMGRALAP IESAIGQWSL
VQRASEGWKR LGELLSRQPV EPARIALPRP RALIEAQNLT VVPPGEMTPV LRGVTFRLEP
GQALGVIGPS GSGKSTLARA LIGVWRPAAG HMRLDGAALD QYDPDVLGGY IGYLPQRVTL
FEGTIGENIA RLRGAPDGEA VVAAARKAAA HDMIVALPSG YDTRVSALGG RLSGGQIQRI
GLARAMFGNP VFLVLDEPNS NLDNEGSLAL NAAIRVMKQA GGSVFIMAHR PAAIQECDLL
MVMENGMRAA FGPRDTVLRE MVKNHTEIVR NAGPGGVS
|
|---|
| |