| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_0050 |
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| Symbol | |
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| ID | 5082459 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides ATCC 17025 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009428 |
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| Strand | + |
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| Start bp | 57105 |
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| End bp | 59357 |
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| Gene Length | 2253 bp |
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| Protein Length | 750 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640481605 |
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| Product | ribonuclease R |
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| Protein accession | YP_001166267 |
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| Protein GI | 146276108 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCAAT TGCCCTCCAA AGCCCAGATC CTCGACTGGA TCGCCCAGAA CCCCGCCCTT
TCCGCGAAGC GCGACATTGC CCGCGCCTTC GGCATCAAGG GCAGTGCCGC GCGCATCGAG
CTGAAGCGCC TCCTGCGCGA GATGGAGGCG GATGGCGCGC TGGAAAAACG CAAGCGCAGC
TTCGCCCCGC AAGGCGCCCT GCCGCCGGTC TCGGTGCTCG AGATCACGGG CCCGGACGCC
GAGGGCGACC TCTTCGCCCG GCCGCTGGAA TGGGACGCCG AGGGCGAGCC GCCCCGCATC
CTCTTCGTGC CCAAGAAGGG CGATCCCGCG ATGGCGCAGG GCGAGCGCAT CCTCGCCCGG
CTGACCGAGG TCGAGGGCGA GGAGCACAGC CACGAGGCGC GGCTGATCCG GCGGCTCGGG
GGCGCGAAGC CACGGATCCT CGGCATCTTC CGGGCGAGTG CGGACGGCGG GCGGATCCTG
CCGATCGACA AGGGTGAGGA CAAGGAATGG CGCGTGGCGC GCGACGGCGC GGCGGGGGCC
CGTGACGGCG AACTGGTCGA GGCCGAGCAG GTCGGGCCGC GCCGTCTCGG CCTGCCGCTG
GCCCGCGTGA CGTCCCGGCT GGGCGATCCG GCGGGTCCGC GCGCGGTGTC GCTGATCGCC
ATTCATCAGC ACGGCATCCC CGACAGCTTC CCCGACGCCG TGCTGGCCGA GGCCGAGGCT
GCGGGCCCCG CGCCGATGGG CGAGCGCGAG GATCTGCGCC ACCTGCCCTT CGTCACCATC
GACCCGGTCG ATGCGCGCGA CCGGGACGAT GCGGTGCTGG CCGAGCCCGA CCCCGATCCG
CAGAATCCGG GCGGCCATGT CGTCTGGGTG GCCATCGCCG ATGTGGCCCA CTACGTCCGT
CCCGGTTCGG CGCTCGACCG CGAGGCGCGC GAGCGCGGCA ACTCCACCTA CTTCCCCGAC
CGCGTCGTGC CGATGCTGCC GGATGCGCTG TCGGGCGATC TCTGTTCGCT GCACGAGGAG
GTGGACCGGC CCTGCATGGC CGTGCGGATG CGGCTCTCGG CGCAGGGCGA GAAGATCTCT
CACCGCTTCA CGCGGGGCAT GATGCGCTCG CGCGCAAGCC TGAACTACGC GCAGGTGCAG
AAGGCGCAGG ACGGCCAGCC CGACGAGGCG ACGGCGCCGC TCCTGGAGAC CATCATCCGG
CCGCTCTACG AGGCCTACCG GGCGCTCAAG CACGCCCGCG CGGTGCGCCA GCCGCTCGAC
CTCGACCTGC CCGAGCGCAG GATCGAGCTG TCGGAGGATG GGCGTGTGCT GTCGGTGGCC
TTCCGCGAGC GGTTCGACGC CCATCGGCTG ATCGAGGAAT TCATGGTGCT GGCGAACGTC
GCGGCCGCCG AGGAACTGAC GCGCCTGCGC CGGCCGCTGC TGTTCCGCGT CCATGAGGAG
CCGTCGCCCG ACAAGCTCGA GGCGCTGCGC GAGGTGGCCG AGGCCTCCGG CTTCACGCTG
GCCAAGGGGC AGGTGCTGAA GACCGCGCAT CTGAACCGGC TTCTGGCGCA GGCCGAGGGC
ACCGAGTTCG ACGAGCTGCT GAACATCACC ACGCTGCGCT CGATGACCCA AGCCTATTAT
CATGCCGAGA ACTTCGGCCA CTTCGGTCTG GCGCTGCGCA GCTATGCGCA TTTCACCTCG
CCGATCCGTC GCTATTCGGA TCTGATCGTG CATCGGGCGC TGATCCTTGC GCATGGCTGG
GGCGATGACG GGCTGTCGGC CCAGGACATC GAGATGCTGG AAGATACGGC CAAGCAGATC
TCGGACACCG AGCGGCGCAG CATGGCGGCC GAGCGGGATA CGACCGACCG CTACCTCGCC
TCCTGGCTCT CGGACCGGGT GGGGGCGGAA TTCGCCGGTC GGATCTCGGG GGTGCAGCGG
TTCGGCCTGT TCGTGAAACT CGACGAGAGC GGGGCCGACG GTCTCATCCC GATCCGGTCC
GTGGGGCGCG AGTTCTTCCA TTTCGATCCC GAGAGCCAGA CCCTGATGGG CGCGGATACG
GGAACCGTCC TGGGCATCGG GCAGCGGGTG ACGGTGCGCC TTGCGGAAGC CGTGCCGCTG
ACGGGGGGGC TGACGCTGGA ACTTCTGGCG GTCGAGGATC GGGGGTTGCC CGCCCCCAAG
CGGCGGCGTG GCCGGTCGGC GCCCCGCAAG CCCGCCCGTG ACGCGGCAAG GGCCGGGAAG
GCGAAGCGCC GGGTGTTGCG CACGCGGCGG TGA
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| Protein sequence | MDQLPSKAQI LDWIAQNPAL SAKRDIARAF GIKGSAARIE LKRLLREMEA DGALEKRKRS
FAPQGALPPV SVLEITGPDA EGDLFARPLE WDAEGEPPRI LFVPKKGDPA MAQGERILAR
LTEVEGEEHS HEARLIRRLG GAKPRILGIF RASADGGRIL PIDKGEDKEW RVARDGAAGA
RDGELVEAEQ VGPRRLGLPL ARVTSRLGDP AGPRAVSLIA IHQHGIPDSF PDAVLAEAEA
AGPAPMGERE DLRHLPFVTI DPVDARDRDD AVLAEPDPDP QNPGGHVVWV AIADVAHYVR
PGSALDREAR ERGNSTYFPD RVVPMLPDAL SGDLCSLHEE VDRPCMAVRM RLSAQGEKIS
HRFTRGMMRS RASLNYAQVQ KAQDGQPDEA TAPLLETIIR PLYEAYRALK HARAVRQPLD
LDLPERRIEL SEDGRVLSVA FRERFDAHRL IEEFMVLANV AAAEELTRLR RPLLFRVHEE
PSPDKLEALR EVAEASGFTL AKGQVLKTAH LNRLLAQAEG TEFDELLNIT TLRSMTQAYY
HAENFGHFGL ALRSYAHFTS PIRRYSDLIV HRALILAHGW GDDGLSAQDI EMLEDTAKQI
SDTERRSMAA ERDTTDRYLA SWLSDRVGAE FAGRISGVQR FGLFVKLDES GADGLIPIRS
VGREFFHFDP ESQTLMGADT GTVLGIGQRV TVRLAEAVPL TGGLTLELLA VEDRGLPAPK
RRRGRSAPRK PARDAARAGK AKRRVLRTRR
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