Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rsph17025_0046 |
Symbol | dapD |
ID | 5082455 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides ATCC 17025 |
Kingdom | Bacteria |
Replicon accession | NC_009428 |
Strand | + |
Start bp | 54204 |
End bp | 55028 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640481601 |
Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
Protein accession | YP_001166263 |
Protein GI | 146276104 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGTATT CCGCGCTCGA AGCCGCCATC GAAGCCGCCT GGGAGGCGCG CGACACGATC ACCCCGGCCA CCAAGGGCGA GGCGCGCGAC GCCGTCGAGG CGACGCTCGA GGCGCTCGAC AAGGGCAGTC TGCGGGTCGC CGAAAAGCGC GGCGCCGACT GGCATGTGAA TCAGTGGGCG AAGAAGGCGG TGCTGCTCGG CTTCCGGCTG AAGGACATGG ACGTGCAGAC GGGCGGCCCG CAGGGCGGCA CCTGGTGGGA CAAGGTGGAC AGCAAGTTCG CCCAGTGGGG CGAGGCGCAG TGGAAGGCCG CGGGCTTCCG CGCGGTGCCG AACTGTATCG TCCGCCGCTC GGCCTATATC GCCAAGGGCG TGGTGCTGAT GCCCTCGTTC GTGAACCTTG GCGCCTATGT CGATGAAGGC ACGATGGTGG ACACCTGGGC CACCGTCGGC TCCTGCGCGC AGATCGGTAA GAACGTGCAT CTCTCGGGCG GCGTGGGCAT CGGCGGCGTG CTGGAACCGA TGCAGGCGGG GCCGACGATC ATCGAGGACA ACTGCTTCAT CGGCGCCCGC TCGGAGGTGG TCGAGGGCTG CATCGTCCGC GAAGGCTCGG TGCTGGGCAT GGGGGTCTTC ATCGGCAAGT CGACGAAGAT CGTGGACCGC GAGACCGGCG AGGTCATGTA TGGCGAGGTC CCGGCCGGTT CGGTCGTCGT CGCGGGCTCG ATGCCGTCGA AGGGCGGGGT GAACCTCTAT TGCGCGGTGA TCGTGAAGCG CGTCGATGCG CAGACGCGGT CGAAGACCTC GATCAACGAG CTGTTGCGCG ACTGA
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Protein sequence | MSYSALEAAI EAAWEARDTI TPATKGEARD AVEATLEALD KGSLRVAEKR GADWHVNQWA KKAVLLGFRL KDMDVQTGGP QGGTWWDKVD SKFAQWGEAQ WKAAGFRAVP NCIVRRSAYI AKGVVLMPSF VNLGAYVDEG TMVDTWATVG SCAQIGKNVH LSGGVGIGGV LEPMQAGPTI IEDNCFIGAR SEVVEGCIVR EGSVLGMGVF IGKSTKIVDR ETGEVMYGEV PAGSVVVAGS MPSKGGVNLY CAVIVKRVDA QTRSKTSINE LLRD
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