Gene Rsph17025_0003 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRsph17025_0003 
Symbol 
ID5084062 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodobacter sphaeroides ATCC 17025 
KingdomBacteria 
Replicon accessionNC_009428 
Strand
Start bp2344 
End bp3462 
Gene Length1119 bp 
Protein Length372 aa 
Translation table11 
GC content67% 
IMG OID640481558 
ProductDNA polymerase III subunit beta 
Protein accessionYP_001166220 
Protein GI146276061 
COG category[L] Replication, recombination and repair 
COG ID[COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) 
TIGRFAM ID[TIGR00663] DNA polymerase III, beta subunit 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.295963 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value3.50231e-06 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAGATCA GCATCGAGCG CGGCGCTCTG CTAAAGGCCG TGGGCCAGGC CCAGTCGGTC 
GTCGAGCGGC GGAACACCAT TCCGATCCTC GCCAACGTGC TGATCGAGGC CGAAGGCGAC
ACCGTCTCGT TCCGCGCCAC CGACCTCGAC ATCGAGGTGG TGGACCGGAC GCCCGCGGTG
GTGGAGCGGC CCGGCGCGAC GACCGTTTCG GCGGTCATGC TGCACGAGAT CGTCCGCAAG
CTGCCGGACG GCGCGCTGGT CGGCCTGAGC GAGGATGCGG CCTCGGGCCG GCTGACGGTG
ACGGCCGGCC GGTCGGTATT CAGCCTTGCC ACGCTGCCGC GGGAGGATTT CCCCGTGATG
GCAAGCTCGG AATACAGCTC GAACTTCACC GCGCCGGCCC CCGTGCTGCG GCGCTTGTTC
GACAAGGCGA AGTTCGCCAT CTCGACCGAG GAGACGCGCT ATTACCTCAA CGGCGTCTTC
ATGCATGTGG CGACGGGCGA GGAGGGGCCG GTGCTGCGCT GCGTGGCGAC CGACGGCCAC
CGTCTCGCGC GGATCGACGC CCCGCTGCCC GAGGGTGCCG AGGGCATGGC CGGGGTGATC
GTGCCGCGCA AGACCGTGAA CGAACTGCGC AAGCTCCTCG ACGACGACGA GGCGCAGATC
AAGGTTTCCG TGTCGGAGAC CAAGGTGCGG TTTGCCACGC CGCAGATCAC CATGACCTCG
AAGGTGATCG ACGGCACCTT TCCCGACTAT TCGCGCGTGA TCCCGACGGG CAATGCGCGG
CGCCTCGAGG TGGATGCGCA GGAGTTCGCG AAGGCTGTGG ACCGGGTGGC CACCGTCTCG
TCCGAGCGGT CGCGGGCGGT GAAGCTGTCG CTCGACGAGG ATCGGCTGGT TCTGTCGGTC
AATGCGCCTG ATTCCGGCGC GGCCGAGGAG GAACTGGCCG TGGCTTATGG CGACGAGCGG
CTGGAGATCG GCTTCAACGC CAAGTATCTG CTCGAGATCG CAAGCCAGGT GGACCGGGAG
AACGCCGTGT TCCTGTTCAA CTCGTCGGGC GATCCGACGC TGATGCGGGA AGGCAACGAC
ATGTCGGCGG TCTATGTCGT CATGCCGATG CGCGTGTGA
 
Protein sequence
MKISIERGAL LKAVGQAQSV VERRNTIPIL ANVLIEAEGD TVSFRATDLD IEVVDRTPAV 
VERPGATTVS AVMLHEIVRK LPDGALVGLS EDAASGRLTV TAGRSVFSLA TLPREDFPVM
ASSEYSSNFT APAPVLRRLF DKAKFAISTE ETRYYLNGVF MHVATGEEGP VLRCVATDGH
RLARIDAPLP EGAEGMAGVI VPRKTVNELR KLLDDDEAQI KVSVSETKVR FATPQITMTS
KVIDGTFPDY SRVIPTGNAR RLEVDAQEFA KAVDRVATVS SERSRAVKLS LDEDRLVLSV
NAPDSGAAEE ELAVAYGDER LEIGFNAKYL LEIASQVDRE NAVFLFNSSG DPTLMREGND
MSAVYVVMPM RV